NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10008054

Scaffold Ga0209500_10008054


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10008054 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6633
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F003965Metagenome / Metatranscriptome459Y
F011487Metagenome / Metatranscriptome290Y
F024319Metagenome / Metatranscriptome206Y
F039631Metagenome / Metatranscriptome163Y
F095473Metagenome105N
F099300Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000805411F099300AGGMGVMKELHLDITTCDLCYGVGWLYFGNGIDFDTESCDCNPHQLFITKENN
Ga0209500_1000805418F003965AGGMTQLITVCKEHTPNKIGISEYQDTQFTFCEICENNIERWYNDTDPERLPMWTDWKISK
Ga0209500_1000805419F024319AGGMTNRIWESRNDYQNESDAMRLGYVSCSAGCGRVTAWSLCTMCGGNYATHNLVGKGSK
Ga0209500_100080542F011487AGGAGMNYENDELYDEYYSTVCPTCKENSVDEYEEKCTHCLLEEMSVTYNEDIALEMSLGLDY
Ga0209500_1000805420F039631AGGTGGMTTLDKNYIKSATYGHMTLNQRIALAAEKVANGEVVSFRGASVTTYAKVMRLANRIKQEREFPQCPCEECN
Ga0209500_1000805422F095473GAGMNTMTCQVINCESTELVYSGTDAFMLGITTEAYCYKCANAYAQIDRAMQKVREEYLSQVSASSLTTSD
Ga0209500_100080544F000447AGGMGFIEFARINEEGVSWVDLSEATPNELLDLEIGLFQEGAI
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