Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10004468 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10004468 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9250
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9250

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033329	Metagenome	177	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065376	Metagenome	127	Y
F085061	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000446813	F059603	N/A	MDLTTEEKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHQSFRMHLMNANPESIVYQFYLKRCAKWIKTLKLHNQKLIPIFTPNGTED
Ga0209500_1000446815	F057894	N/A	MAANRWRSGYMRIQDDTFTGYLTPIGSVQDVEVTFKVKAMQKIMEASEDLQVEAPNEYLIGALRDSDAGYKTADVIIYNKVVRLKLTDEDIKRSKTLSL
Ga0209500_100044683	F065376	N/A	MNAANIENLSEFYKSLNDTEVLRAQSMIQAAPQIIEDKLSYDMSAESIKAANDAIKHIELNRKMVTLPIDAYKKSIMDVEKDIVAPLKAYIEHRKQMMIDYSNELAVKKAVADAKIAQDAADALKSAVTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGEVDWATLLWTLMQAEMFDVAELLRKLPKAMEITKIDRINGIELTEVKTQVIR
Ga0209500_100044684	F085061	N/A	MSTFDNIHYEFTQFNRYLDAIIDPREADNDTMEAKVKEAIIQAYSNGYHDGQKAIIDRFPRPSSQGGEEGGREYYESL
Ga0209500_100044686	F033329	N/A	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETEPSAMPPNARLIYDAIMKHPMLRLVFEKSAKEITFIKEIDIDGRKVAAKGILDLHCPMYSINADIKTTSCTTLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTTEEIDTAENLIREYLVHRGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10004468

Overview

Ecosystem & Geography

Associated Families

Sequences