Scaffold Ga0209500_10001100

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10001100
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21247
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F024789	Metagenome / Metatranscriptome	204	Y
F025943	Metagenome / Metatranscriptome	199	Y
F065439	Metagenome / Metatranscriptome	127	N
F095454	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100011001	F095454	GAG	VDFGKIAIILSQINTDALELEDVEYLPSDFWKDLEDGLGLADFIAGGWAEPTEAGKSQLELAWRTLCDIREIDPETMYDNPADFFKAQETE
Ga0209500_1000110020	F025943	AGGAG	MRTFAVIENNTVVNIIVGVEDEVVAANPGKYIEYTNGWDYNNGIDGGSFFPVPVTTEEI
Ga0209500_1000110036	F003688	GAG	MYTDQMRRAFHSIIPPKGFNVELIDNEHFFTIKLNEYVFAKMVHDDKIQALQYVVKLKNALEAEGAIVLVTREALDK
Ga0209500_1000110039	F065439	N/A	MEKIVSKNKELEWVGWDVVERKRSDLARTSPSGVRVKNAWYLQKTFNLDRNGWDIPNKYG
Ga0209500_100011008	F024789	GGA	MKEPKIAQMDWRSLGYWPVWKDGKKVWVPKDEPFNKDSKN