NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000724

Scaffold Ga0209500_10000724


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000724 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27249
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (68.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F002515Metagenome / Metatranscriptome552Y
F003965Metagenome / Metatranscriptome459Y
F026557Metagenome / Metatranscriptome197Y
F029107Metagenome / Metatranscriptome189Y
F071231Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000072412F000808AGAAGGMEYTYSLTTAYDGELVNTLRVSNLLEIVNAWNLCVDHGTAKEYATYNLSDPTGKMFTKTFHRNGTVGVK
Ga0209500_1000072416F002515N/AMSTKKTAEELRRLMELRRSNAASAVPSKKTYTRKGRKCQSAMLELKNNNN
Ga0209500_1000072418F071231AGGTGGMMTRKDYVATAEILSNYFATSVFDEQGEILFADLVDEFSLMFETDNERFDANRFAIACYKELEMSK
Ga0209500_1000072420F026557AGGTGGMINSVLTIPCEECHSTGLIFFGNGNDFDVETCVCDFGMEQDLNLFNTPESN
Ga0209500_1000072427F003965AGGTGGMTTLEKMTVCLEHNPMKSAISEVADTEYTFCQNCEQNIERWYNDTDPERLPMWTDWKVSQ
Ga0209500_1000072439F029107N/AMTLHAHTTLSNTTATRLSPNGLHSGMDITIQNIHESAYVYVGGEGVTASGYGYRIAPGAAFSIELPGQDALYAISTVNSSKVAILQTGLEG
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