NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000649

Scaffold Ga0209500_10000649


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000649 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29186
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014841Metagenome / Metatranscriptome259Y
F041730Metagenome159Y
F058789Metagenome / Metatranscriptome134N
F099272Metagenome103Y
F105048Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000064911F058789N/AMGSFVSKAPCRDADPWLFDQFNLDLAQPALNYCSRCIFWEECDSLVQPKPSFYDGVVAGKVWRNGRIVAKLDATSPNRLIVGEELDENSDALEFSGSELLGDRHDLFLSREEQDNGREQASKEDL
Ga0209500_1000064929F041730AGGMALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIMPVVIQKTFDATGSFTVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDSYQALLTRYNGAEGIRVIVVDADEKADDAGTYATDASKAASALANYNTNQLMMMG
Ga0209500_100006494F099272GGAGGMKCFTCGSELRLTMVEGKTYCFRCEADASLQAFGVVRQIKERTA
Ga0209500_100006495F105048AGGTGGMIVPSWLRRNKPLRVSEGSLRAIRRAQLDKALAEQAESAKAKRMFRFKLNS
Ga0209500_100006499F014841N/AMGNKEEQKKPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGNDDVGLRDN
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Institute for Fundamental Biomedical Research
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