NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000475

Scaffold Ga0209500_10000475


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000475 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34469
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (76.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012098Metagenome / Metatranscriptome283Y
F014968Metagenome258Y
F030064Metagenome186Y
F065553Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100004751F065553N/AMANTMTLIASSTVGSGGTSSIDFTSIPSTYTDLQLMLSARGA
Ga0209500_1000047520F012098AGGMPKVHNIGPIFVQVTKFPYEWGSKVVVRGWTQEIEEPFRTSKPFILRLPKFKALVCGRWTGLKTEEEALSVALETREVTYEDFTEEAGWTPAPDTDSEESVEDIYARLDSVDGTFNVHDWQMYYRLAKESD
Ga0209500_1000047528F030064AGGAGVTNTFATIGIVAGALISLGVLLSPFYKKLKRWGSWMERFMRDWEGEEASPGRDAVAGVMQRLNNMDGELSQNGGVTTVKDRVDRLYENQAILMEAFVEMGERLISIENCLTNTKTQD
Ga0209500_1000047551F014968AGAAGGMSHIIDLSKEEVRACADIALNRWMMKFGSEDRPNYAGDNKRNLEPEIAANVRTIVAEYAVAKLYKKSFTFPFYTNEEHYFRKDIAEVGTNIEVKSIRTKDEIPVFPKDIREGWILVGARVLDRDYYSQVEVFGWLPMQECTRDEWKYAPEGSWRIPLDQFNQDMI
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