Scaffold Ga0209502_10032929

Overview

Basic Information

• Taxon OID: 3300027780
• Scaffold ID: Ga0209502_10032929
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2996
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F046006	Metagenome	152	N
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209502_100329291	F000720	GAGG	MTLQDDKIMRAKIPDRMMSTTFTLPIDDRKVVGIVNYTANSTGVVPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVHYFNKNIEDIIMGIQPDKKQRMLSTDPYAAQMKE
Ga0209502_100329292	F046006	GAGG	MPLAKYINFVWLLIIIHFCITVIVVNFRYLDKLNNTIDTMWHEIEQVKDTNIKLYQFIEEHGNDITGR
Ga0209502_100329293	F090883	GGAGG	MVTIAIRMKRINNCRDMLSKATCSRMRKMWKRNYEKLLKEYWEEEGERILNAAGQVH