Scaffold Ga0209709_10059043

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10059043
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2170
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005608	Metagenome / Metatranscriptome	395	Y
F028833	Metagenome / Metatranscriptome	190	Y
F041248	Metagenome / Metatranscriptome	160	Y
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100590431	F072760	N/A	MSIELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENKKTELELSLTY
Ga0209709_100590433	F041248	N/A	MSPQKRARQEGAIERTKASILVYEEKLKSCEDDTEKKLLKKKIERAQTTISNTKII
Ga0209709_100590435	F028833	N/A	MNNLTYLWSDGMIDTIAKKVVEEPMENVDDRPQHVIDEERGDAIRQWRKEQAQMEMFDDPYLNWSGLR
Ga0209709_100590436	F005608	GGAG	MKKTTIEVLEKGELIFGSPTAGKYFVRRYEDGEEMGGGFFKTKKEALTHAREYKKDK