Scaffold Ga0209709_10025583

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209709_10025583

Scaffold Ga0209709_10025583

Overview

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10025583 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3758
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	79
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084346	Metagenome / Metatranscriptome	112	Y
F099439	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100255831	F084346	GAG	MTFQTIHPRYQVETSKEQSMLSSKQQAEDIYQKYVNQKIPCELFLNGQLQKEFKPL
Ga0209709_100255833	F099439	AGGAG	MKTFEVDYETTIPPWRFGHEEIEAEDLDTAKKKFCSKHEAARLLKIYMINTDIPGKVI

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