Scaffold Ga0209709_10005738

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10005738
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9697
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F028833	Metagenome / Metatranscriptome	190	Y
F038414	Metagenome	166	Y
F042386	Metagenome / Metatranscriptome	158	N
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000573811	F001048	AGGA	MKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKDFNRIELLVNKRVRWEIGSEGMAIWDACGVKDIPTLAKAYGIK
Ga0209709_1000573815	F038414	GAG	MTRKEQRDNTINDLHKKRTSPKTIQIQNSKTARSQAEWLHISTEGQGTYDVGSRAMKRDRLANKKLRAKQQANLR
Ga0209709_1000573816	F072760	GAG	MSMERHTLRAVKITQNIFELNRVNTELQHLKICVKVLENKKIELENSF
Ga0209709_1000573819	F028833	N/A	MNNLTYLWSDGMVDTIAKKVVEEPMENVDDRPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR
Ga0209709_100057386	F042386	N/A	MNNAGLTTTYEEGETGQFELFKDNASYMKEDARDGIPKFFTLEDIERRLGGLGEY