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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10004541 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11143 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (62.86%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000615 | Metagenome / Metatranscriptome | 984 | Y |
| F001048 | Metagenome / Metatranscriptome | 793 | Y |
| F007052 | Metagenome / Metatranscriptome | 359 | Y |
| F011704 | Metagenome / Metatranscriptome | 288 | Y |
| F039176 | Metagenome | 164 | Y |
| F052633 | Metagenome / Metatranscriptome | 142 | Y |
| F072760 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000454111 | F072760 | GAG | MSMERHTLRAVKITKNIFELNRLNTELRHLKICVKVLENRKIELEDSF |
| Ga0209709_1000454112 | F001048 | AGAAG | MKIVSTKQFWWRFNYLKRNGGEITVTDRTPEMDVKEFNRISSLVNKRVRWELGSEGFAKWDSCGVKDIPTLAKAYRIS |
| Ga0209709_1000454116 | F039176 | GAG | LEIDLSLNRSLEELTSSYFEAHGAGVDIDNDSSEEERSDYYVLENYLSDLGAI |
| Ga0209709_1000454123 | F011704 | N/A | LFGEHKEKFVQMNIENFQELIDISDYVDVVEEYLIRKFKDGGNYIIIDSYGDFLILDRDNVDNVFSTIWNDLYGSISEEIPYVLN |
| Ga0209709_100045415 | F052633 | N/A | MKKKILERFAETLDICKVHWKEIFALSFLMHFFFDWFIFLAGFLVGKYF |
| Ga0209709_100045416 | F000615 | GAG | MCRLRTFYECSDGEMGWAEIVLSYDEDIAAHIRHWGTGGRIVITEHVELIEGAL |
| Ga0209709_100045418 | F007052 | GAG | MEKNETYFVARLINKGKFLSSEIFESLEEARLWAMAEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSERVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |