Scaffold Ga0209709_10004268

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10004268
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11567
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023242	Metagenome	211	Y
F028196	Metagenome / Metatranscriptome	192	Y
F042016	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000426828	F023242	N/A	MKDNFRPSAAQPNPPKDKRTYTKYKEHGEDMSHENERIHTPNEPKEDRGTLDLTFLIEEHKREIWEYKKKESDWIKTDNILQGSKKIIDELSTKLVGLARRIQELEYDNATYKKEIEKMLAEKTK
Ga0209709_100042683	F028196	AGG	MRKQLNLSQKTGIQFSLSFLIQILGTVVLAVWGYSQLDARISSVHNSVVMHNEKLNAIETDLKENQDKPIPSDHVQNTTLFAHERELRELKTRLGVLEARLYDEKNN
Ga0209709_1000426830	F042016	N/A	MGPEAKFYQKIKRNFSEFSLTRVENLSSLGHPDIL