Scaffold Ga0209709

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10004134 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027779 Open in IMG/M

Scaffold ID

Ga0209709_10004134 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11812
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11812

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (60.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F017326	Metagenome / Metatranscriptome	241	N
F025300	Metagenome	202	Y
F028833	Metagenome / Metatranscriptome	190	Y
F032811	Metagenome	179	Y
F041248	Metagenome / Metatranscriptome	160	Y
F051476	Metagenome / Metatranscriptome	144	N
F072760	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000413412	F001048	N/A	MKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKDFNRISLLVNKRVRWELGSEGFAKWDSCGVKDIPTLAKAYGIK
Ga0209709_1000413413	F051476	GAG	MTYWKAKLIIKNKLHKTELFESVERARLWSMKEAKLAVSHRMFNNTDIVTEITSHNFA
Ga0209709_1000413417	F017326	GAG	MNDYEKVKIEINESVTSDNFKEHLRKNYHNSYDEYLDDTRHIDLDVYYEKNSIPLSELIPKGMTIKEYFGREQRLLRGENISYVKFDKDGYQ
Ga0209709_1000413419	F032811	AGGAG	MKVAPGCYFEQEEDEPIDPIRGIKTSANIKEPTYRRKSILESIPDNYAERIMKLKGDRIVPPERKVRTPEGFAVAIAYNKSGYQLIPKEDLKYEKIRF
Ga0209709_100041346	F028833	N/A	MNNLTYLWSNGMVDSIAKKVAEEPMEDVDNRPQHVIDEERGDAIRQWRKEQDQMEMYNDPVMNWSGLR
Ga0209709_100041347	F041248	N/A	MKQHGKRARQEGAIERTKASILVYEEKLKSCEDDTEKKLLKKKIERAQTTISNTKLI
Ga0209709_100041348	F072760	N/A	MSMELHTLRAVKITQNIFELNRLNTELQHLKVCVKVLENRKTELESSLTH
Ga0209709_100041349	F025300	AGGA	MKKINVETLVPDTFKFLARDMDGKLYAFEKQPNVATDIACDTWDVKEGEILQVTPPVAGVDSVLGDWRESLIEINENVL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209709_10004134

Overview

Ecosystem & Geography

Associated Families

Sequences