Scaffold Ga0209709_10003300

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10003300
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13482
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (81.25%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018267	Metagenome	236	Y
F044592	Metagenome	154	Y
F053548	Metagenome	141	Y
F053549	Metagenome	141	Y
F067640	Metagenome	125	Y
F079212	Metagenome	116	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_100033001	F044592	GAGG	MKVGDLVKYKGTLGIVIGPCKKRWADPADVWVLWTDDHKPKIENGDFMELVNASR
Ga0209709_1000330017	F018267	AGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYEADDRQAGGWNDLIWIVWIDNGKYMVNERNDDVTYLTSS
Ga0209709_1000330023	F101902	AGGA	MMRVGNLVKRRDDHIHHGIVVEVGPQETAIDHGSTVAKVQWNDGDLTCEFIKMLEVLSEG
Ga0209709_1000330024	F053548	GGA	MKGSGTPSIGDLVIALYDELRAISCVGLVMETKGIECKIQWSSESNPIGWWPRSKLKVISAV
Ga0209709_1000330027	F053549	GAGG	MKVGDLVRWENVIYDSMDHHQEQHGLVVQMSRTGHDTESAQVLFSDGETWWLDTQKLVVVNG
Ga0209709_1000330028	F079212	AGGAG	MKNPDEEKLIDRCIESYYNMIRYHRRQIIELSRRKIKDDRCMECFDFEVINESR
Ga0209709_1000330030	F010950	GGAG	MMNIWVVRNTCLYSNETYLSTHITEKGALIAAIKTVRGDLVDGFDEDELEDMRPGMPRDPEEDLKDMTREQLRGIIEDWWEYSFEMNEHGQYEIHQTQAAA
Ga0209709_1000330031	F005547	GAGG	MMKVWVMQGSYEGDMFSSVHLTQKGCALACISDIIEFHGIDDDETALSVVENSYEDAREPIEWDQEKLKEMTSKQLWKIFSDWCEISWDRMSDRNYNLDSHHVEIQA
Ga0209709_1000330032	F067640	AGGAG	MIEVGSLLKMWGHHATWLALDEIAETVLVVNQKTNHKMWADKAAFEVIA
Ga0209709_100033005	F004771	AGGAG	MNRIKTGDLVRMKDTMYDSDLVGIVVDRHPHANHPRDCQVGIKWFGGSGKMDWEPESWLEVISESR