Scaffold Ga0209709_10002521

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10002521
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15870
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (65.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000942	Metagenome / Metatranscriptome	826	Y
F002874	Metagenome / Metatranscriptome	524	Y
F028833	Metagenome / Metatranscriptome	190	Y
F038414	Metagenome	166	Y
F049706	Metagenome / Metatranscriptome	146	Y
F051476	Metagenome / Metatranscriptome	144	N
F072760	Metagenome	121	N
F084346	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000252110	F002874	GAG	MREEIDLSLNRSLEELESSYWEFIDATEGEDSIEWSGSVQEDISALEGYLMKMDIL
Ga0209709_1000252113	F038414	GAG	MTREEQRNNTINELYKKRTSPKTIQIQDSKTASSKAEWLHISTSEVDGEGRGTYDVGSRAMKRDRLADKKLRAKQANLR
Ga0209709_1000252116	F028833	N/A	MSNLTYLWSNGMVDSIAKKVAEEPMENVDERPQHVIDEERGDAIRQWRKEQAQLEMFNDPVMNWSGLR
Ga0209709_1000252117	F049706	GGAG	MKFEEDHPYMKRLDEVLKQYSVVKVSDDNGAHHGVDYEEMKQVILDSLFTSYLGETIRK
Ga0209709_100025212	F084346	GAG	MTFHTIHPRYQVETSKEQSQLSNKQQAEDIYQKYVNQKIPCELFLNGELQKEYKPSI
Ga0209709_1000252130	F000942	AGG	MSNPYELRFRLLEMATGYLQDKQERQLNYAIDAWEFAKERGTADMKVFTDLQPDPYTIEDIKKKAAELYEFVEKQ
Ga0209709_100025215	F051476	GAG	MTYWKTKLIIKNKLHKTELFESLSKARLWSMKEAKLVVSHRMFNDTDIVTEITSHEFA
Ga0209709_100025219	F072760	AGGAG	MSMEKHTLRAVKITQNIFELNRVNTELQHLKICIKVLENKKIELEDSF