Scaffold Ga0209709_10000120

Overview

Basic Information

• Taxon OID: 3300027779
• Scaffold ID: Ga0209709_10000120
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71706
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (71.70%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F004439	Metagenome	438	Y
F004881	Metagenome / Metatranscriptome	420	Y
F028833	Metagenome / Metatranscriptome	190	Y
F046020	Metagenome	152	N
F074779	Metagenome	119	Y
F096067	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1000012021	F002715	N/A	MPVEELQSVKLEVGLLKNEVETRGRQIDTLLAKLDLTTDKLQELTVQIIKLNTRQEEYLRYSSDMTGEFKILHTRIGDLHDKQLEMYKEIESRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE
Ga0209709_1000012031	F074779	GGA	MKSFKGYLTESQAQFNTKDMIFTNAETPALVLSTTALERAFSGLSRIKGWHVTDLTGFKGLKKLQGKKSSISVMTEIEPSDHQPFDGIETEGGIVVELEGTELISSGQDVWSERLEGGRRGISVTKGMFPHMHRHLEFMVKEMYEKFSKKTHSKNSRQLGFDLNELGKVLSQKEKGQFIKEYIDNCESILSKNKRVREELRKYGRTMNTKLNKKHFYNESVVNQISIKNVYAVFEKFDKWASSPWGNSDTEERFEEEEKLLQTVWKNIQIKSQKELISMINKK
Ga0209709_1000012033	F004439	AGAAG	MINSFKTYLTEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGKGIKSISRMEGKKKQISAFFEMQSRYMDIGVATQGGVHSVLEMDADVLLSASGDVMSHLDQKGRRWTSISDLKETSRFVKFGAVEKDLQKMFDPLVKKYLKKGEFQENATVWELWRMAERKVDKKTMSLIIKDYIDGMEKVIKKNIDTFSSAMLSYAKKRTTDLSWDEQIVNNFKVKTAHFFKLRLKIAQTEKEASLYPEQQELIEFAKSKGWKTKMWDAAIGLEAYTRQVAKKELGK
Ga0209709_1000012043	F046020	N/A	VWVSIILFTFSLNAQIDQHFKSKELCWEFYEKHPLLYRQIDEAFPKDYYVRLYNSDEHGLVWITCEKLSDLRGNDNSKFPLNVPLPTPK
Ga0209709_1000012044	F096067	GGA	MKEKDNNIQIFINKKEMLYSRQNMITAINTFLLYFTNSDLDELNDRCKSLKEHRHQQEQQANLEENRTPILSNRWDT
Ga0209709_1000012048	F004881	AGGTGG	MSNNLYKVCSNPNDSIDKSLCILVQDDSPFDGAVIRYTTFKINEQELTGDDIACQYKYEIEIPPHDVGMEISEEAGIEFEKNLGEWLIEIIQQQMDEYAAKDRNLNT
Ga0209709_1000012071	F028833	N/A	MKNKLTYLWSNGMVDGIAKKVAEEPMENISAIDEERSDEIRRRRKELDQMEMYDDPYMNWSGHR
Ga0209709_100001208	F000245	AGGAG	MRTFKEYSFDRKLDKAVSNEIKKRKLGKFPVNATDDIKMRMKPNKPAFTFPSPNSDMMIQVYLRKMTPSKGQPKGMVAFNYQFEDK