Scaffold Ga0209829_10004940

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10004940
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9195
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046246	Metagenome	151	N
F083888	Metagenome	112	N
F083896	Metagenome / Metatranscriptome	112	N
F098560	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000494010	F046246	N/A	MNFSEHAFEACCRYSEFVGGRRLNKKEWLQAMQEAYDSYSHEAPKIRANRIKAVDAEWLESLEQNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAQVSDRPIQFNGAGATSFPTPSAQTSSEPKGWREWVRENSTDPSNADRPWNALEAVAQKYILTQLQK
Ga0209829_1000494014	F083896	N/A	MQNVHQIELGEWLRDQGLRQVLEHTHESWVDAFEEKAGRLLRTQGSFTAEEVVSHVGPPPNHLNAIGAVCRAYARRNDLVGSYEKATNPAAHARVIVRWRDANQQ
Ga0209829_100049402	F083888	N/A	MNYKTLQNSNHSPCECNATSGDRIQGIPDKVQRPARKEIDVTSIGSKMKIDGKGYKIVNLSATLQPVGTDGKGMKKKKKYKEDDGDSAYDES
Ga0209829_100049406	F098560	N/A	MKIEMKRPNKEMCENVETMLNDFAKISTIARTLKTQMVTVYRYISYLQYTKVMVSDVELKMIINHRKARKAAIADLAVVAALAQPAPAPGVTHAATPVLGA