NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10004940

Scaffold Ga0209829_10004940


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10004940 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9195
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046246Metagenome151N
F083888Metagenome112N
F083896Metagenome / Metatranscriptome112N
F098560Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209829_1000494010F046246N/AMNFSEHAFEACCRYSEFVGGRRLNKKEWLQAMQEAYDSYSHEAPKIRANRIKAVDAEWLESLEQNPAYAGIDIKRELGKAQAWASVRKVGVSQMRFLNWLNKAQVSDRPIQFNGAGATSFPTPSAQTSSEPKGWREWVRENSTDPSNADRPWNALEAVAQKYILTQLQK
Ga0209829_1000494014F083896N/AMQNVHQIELGEWLRDQGLRQVLEHTHESWVDAFEEKAGRLLRTQGSFTAEEVVSHVGPPPNHLNAIGAVCRAYARRNDLVGSYEKATNPAAHARVIVRWRDANQQ
Ga0209829_100049402F083888N/AMNYKTLQNSNHSPCECNATSGDRIQGIPDKVQRPARKEIDVTSIGSKMKIDGKGYKIVNLSATLQPVGTDGKGMKKKKKYKEDDGDSAYDES
Ga0209829_100049406F098560N/AMKIEMKRPNKEMCENVETMLNDFAKISTIARTLKTQMVTVYRYISYLQYTKVMVSDVELKMIINHRKARKAAIADLAVVAALAQPAPAPGVTHAATPVLGA

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