Scaffold Ga0209829

Basic Information
Taxon OID	3300027777 Open in IMG/M
Scaffold ID	Ga0209829_10003058 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027777 Open in IMG/M

Scaffold ID

Ga0209829_10003058 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12364
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (91.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12364

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (91.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F014714	Metagenome / Metatranscriptome	260	N
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F029021	Metagenome	189	Y
F061542	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000305813	F014714	N/A	VIELKEPELLDYLKEFYYPDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLTEIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGIMF
Ga0209829_1000305816	F022400	AGG	MRKIAIESSRKIMLRLVTGGKEESGYASSPFGPLKAGLITMRPTKEDQQLTELLNCLEKKITEANIKSLEVLNTYLSDTEHLVEPTNFGLTPALTTTKV
Ga0209829_1000305817	F018703	AGGTGG	LNKTERRIETAKAQAVRRRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWLDISGNTRSSSSRSR
Ga0209829_1000305819	F011756	GAG	VSEPRYLSGDEYALSGGYEELVNCKECAVEFDRTEYQSDTCSECEDKRVMREKESK
Ga0209829_1000305822	F029021	AGGAG	MNLCQFCGWEIARVDWYHRYNGKLICDNCVMDTINEREREEVR
Ga0209829_1000305824	F006842	GAGG	MKKATPAICGDHLVPISECDCLSYMREITRSAERLIQLAKEREEMK
Ga0209829_100030588	F061542	AGGAGG	MICDLCRSGGELNKTGQFKRAVTMHKKCKEDCGCQHQTGPGVGSLAFAMAEPMRTQYPLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209829_10003058

Overview

Ecosystem & Geography

Associated Families

Sequences