Scaffold Ga0209829_10001244

Overview

Basic Information

• Taxon OID: 3300027777
• Scaffold ID: Ga0209829_10001244
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21219
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (87.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015702	Metagenome	252	Y
F034113	Metagenome / Metatranscriptome	175	Y
F035651	Metagenome	171	Y
F037608	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209829_1000124410	F034113	AGGAG	MALTPSWMTNAEGEEEYIDKGAVTTPQINPEVDAKYSAGKAQALATDKVEWPTKVNGLTY
Ga0209829_1000124418	F035651	GGA	MSYYDGDAWTYHELNEIKCAECGDEFDQQDREGGNICPACIDKEGESK
Ga0209829_1000124423	F015702	AGGAGG	MIKEIELEYTSYNLVKLARDKWGDNATEYLAGRLESVITYSQMKALIDSLKKEGK
Ga0209829_1000124424	F037608	GAGG	MSNVIAFHPPKSELILLYEVVDASGKAEWGGNSEREALAWIASSPTATRILVSGWESDEEDAQIIGQPLDITTIVREASK