NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10000726

Scaffold Ga0209829_10000726


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10000726 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28761
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008858Metagenome / Metatranscriptome327Y
F012096Metagenome283Y
F015062Metagenome257Y
F016499Metagenome / Metatranscriptome246Y
F036080Metagenome / Metatranscriptome170Y
F058556Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_1000072640F015062N/AMRTKTKYKINAVAPRLSDEDIDPIEQDDSENVTIPSSDGWLPWDPEDISDIRRLIAEGMPEKQRTVMESFLDGLSYADIYVTEKYWRYHLVKGIEFLKKELKV
Ga0209829_1000072641F058556AGGAGMSTFVVEHIYKGYPMFETIRGVEDISLDLFDKVQTMWVCDSEEEVMAVENELRRKHGERSSKQP
Ga0209829_1000072644F036080AGGMNDRIDLESAVMLMWQTSDDIELLYKHHGDAPKPMTEDEVATALLGIKALHDLRCAALEDMYSRKFELDQYCTDPEKLAARGDWFEKVLAEVKDKRKKK
Ga0209829_1000072649F016499GGAMAKKFKFNEDHAKVILELGQQGASQKAMYAAIGISKDTAAKLKKEDPVFAETMSLATTYGQAFWENMMLANIDNKTFNSRVAEISLRGQYPDDYRERMDIKQDIKQEVKIDFNKEVAELIAALKT
Ga0209829_1000072651F012096AGGAMSTWLIAAMGLVYLVVAIDQFIKGGVGTGIMFLGYAIGNVGLVIVAK
Ga0209829_100007267F008858AGGAGMANKKQEGELGFRQTYKQTGNQGYGGGPGETTIDAGNSGSHRDNNWKIGAKQANTKAAGKIGPGKNLNEIGGGNFY
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