NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10000422

Scaffold Ga0209829_10000422


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10000422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39207
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (86.89%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F014940Metagenome / Metatranscriptome258Y
F031398Metagenome / Metatranscriptome182Y
F074312Metagenome / Metatranscriptome119Y
F075600Metagenome / Metatranscriptome118Y
F083897Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_1000042227F031398AGGAGMATMKSSLTTKVPSPANQGGHGSSDATTQKTKIQTKRGPEGTGNSSILYTKQPSGTKGTNKGAK
Ga0209829_1000042243F074312GAGMAEGIEKFIAKIEAAKTEPLNPKDSEWFEGFNQGLDWAIRILTGDKSAS
Ga0209829_1000042255F083897N/AMAKNISDLKATPGSEADYRGLGPIRVCPCGSDLWNVKCKFDEDNEIGIYFLDMNCALCDSAATSPTPEGRL
Ga0209829_1000042256F075600N/AMSEIKVQHRSFSSFTSWLRCGKAWQLERGMQAPSEPAWWFVGGSAFHLAAEKYLLQKFDGTKETKEIFPF
Ga0209829_1000042259F001937GGAGMSPDTATIVYSYFFVAAALLGGLALIAKHTISKHTEELKDKLSRIEYALYNDGKTGLINKVEELLENQQQIKIDVEVMKAKAEL
Ga0209829_100004229F014940AGGAMALTDGRTTVYHLNRLAGTLINDVPQLDFNGAANTWAFNVTGKKYSRGIDALNQIYAFRNSGKNYQYDTPGAFNALAGTVGLGEAEAARRIAS
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