Scaffold Ga0209810_1000715

Overview

Basic Information

• Taxon OID: 3300027773
• Scaffold ID: Ga0209810_1000715
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64448
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (55.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005641	Metagenome / Metatranscriptome	394	Y
F017525	Metagenome / Metatranscriptome	240	Y
F079095	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_100071540	F079095	GGCGG	VARTVVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL
Ga0209810_100071544	F017525	AGGAGG	MSETLIRPETKQAELLDADAPCTAELADCTCPDFCERDHDNE
Ga0209810_100071561	F005641	N/A	MSLRSQPLEQEVTLPDGRVLAVRVGIAEDSYIPRRELDTVVLELWDEERGEHLAGVATVLSADDVDAARSLLREAVTGLGDGSLEPTAGALEPLADSLPPE