Metagenome / Metatranscriptome Family F079095

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079095
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	42 residues
Representative Sequence	VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL
Number of Associated Samples	101
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.48 %
% of genes near scaffold ends (potentially truncated)	33.62 %
% of genes from short scaffolds (< 2000 bps)	87.93 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (7.759 % of family members)
Environment Ontology (ENVO)	Unclassified (21.552 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.14% β-sheet: 0.00% Coil/Unstructured: 52.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF12773	DZR	28.45
PF00334	NDK	12.93
PF08245	Mur_ligase_M	6.90
PF08241	Methyltransf_11	3.45
PF10458	Val_tRNA-synt_C	3.45
PF00072	Response_reg	0.86
PF07729	FCD	0.86
PF00291	PALP	0.86
PF08264	Anticodon_1	0.86
PF13649	Methyltransf_25	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	12.93
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.86
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	88.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	88.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	26.72 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.66 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	25.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	14.66 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.66 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.86 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.66 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.86 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.66 %
unclassified Patulibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter	0.86 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.86 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	14.66 %
Patulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp.	0.86 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.86 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10066998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	913	Open in IMG/M
3300000955\|JGI1027J12803_105312058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300001535\|A3PFW1_10033380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300003324\|soilH2_10283229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1054	Open in IMG/M
3300004156\|Ga0062589_102264166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	558	Open in IMG/M
3300004157\|Ga0062590_101634094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	653	Open in IMG/M
3300004480\|Ga0062592_100653679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	905	Open in IMG/M
3300004633\|Ga0066395_10303309	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300004643\|Ga0062591_101040909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300004643\|Ga0062591_102329300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	560	Open in IMG/M
3300005175\|Ga0066673_10121532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1426	Open in IMG/M
3300005175\|Ga0066673_10234824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1058	Open in IMG/M
3300005177\|Ga0066690_10101045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1852	Open in IMG/M
3300005178\|Ga0066688_10812444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	584	Open in IMG/M
3300005332\|Ga0066388_101838491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1079	Open in IMG/M
3300005332\|Ga0066388_103536838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	798	Open in IMG/M
3300005337\|Ga0070682_100040799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2857	Open in IMG/M
3300005337\|Ga0070682_100800719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	765	Open in IMG/M
3300005339\|Ga0070660_101396580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300005434\|Ga0070709_10274977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1222	Open in IMG/M
3300005454\|Ga0066687_10121678	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300005518\|Ga0070699_101716686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300005526\|Ga0073909_10676262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300005532\|Ga0070739_10002873	All Organisms → cellular organisms → Bacteria	22207	Open in IMG/M
3300005539\|Ga0068853_100921578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	840	Open in IMG/M
3300005544\|Ga0070686_101718270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	533	Open in IMG/M
3300005547\|Ga0070693_101456434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300005568\|Ga0066703_10129860	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300005614\|Ga0068856_100081717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3206	Open in IMG/M
3300005615\|Ga0070702_101383163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300005764\|Ga0066903_101189432	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300005905\|Ga0075269_10021821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1013	Open in IMG/M
3300006028\|Ga0070717_11632839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300006173\|Ga0070716_100958294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300006800\|Ga0066660_10920352	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300006804\|Ga0079221_10353266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp.	889	Open in IMG/M
3300006806\|Ga0079220_11759102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300006852\|Ga0075433_11293155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
3300006854\|Ga0075425_102964412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	520	Open in IMG/M
3300009137\|Ga0066709_101057486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1191	Open in IMG/M
3300009137\|Ga0066709_101542105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300009177\|Ga0105248_10666232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1174	Open in IMG/M
3300010043\|Ga0126380_10573597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	883	Open in IMG/M
3300010046\|Ga0126384_11887986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300010152\|Ga0126318_10483937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	660	Open in IMG/M
3300010360\|Ga0126372_10005723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6071	Open in IMG/M
3300010361\|Ga0126378_10611676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300010362\|Ga0126377_12174005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	631	Open in IMG/M
3300010364\|Ga0134066_10398860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300010373\|Ga0134128_10007989	All Organisms → cellular organisms → Bacteria	12739	Open in IMG/M
3300010376\|Ga0126381_101094002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1151	Open in IMG/M
3300010376\|Ga0126381_102131330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807	Open in IMG/M
3300010376\|Ga0126381_102240659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300010396\|Ga0134126_10250270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2096	Open in IMG/M
3300012199\|Ga0137383_10289653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1199	Open in IMG/M
3300012199\|Ga0137383_10721088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300012209\|Ga0137379_11827388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300012211\|Ga0137377_11311722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300012399\|Ga0134061_1120630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300012911\|Ga0157301_10335486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300012948\|Ga0126375_11077673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	660	Open in IMG/M
3300012955\|Ga0164298_10848723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300012960\|Ga0164301_11725976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300012972\|Ga0134077_10396052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	596	Open in IMG/M
3300012975\|Ga0134110_10084697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1271	Open in IMG/M
3300012988\|Ga0164306_11965105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300012989\|Ga0164305_11325969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300013763\|Ga0120179_1055954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300013772\|Ga0120158_10297491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	782	Open in IMG/M
3300014497\|Ga0182008_10395984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	741	Open in IMG/M
3300015261\|Ga0182006_1327005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300015265\|Ga0182005_1288369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300016371\|Ga0182034_10421132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1100	Open in IMG/M
3300017959\|Ga0187779_10725104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300017973\|Ga0187780_10370156	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300018431\|Ga0066655_11438376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300019888\|Ga0193751_1002296	All Organisms → cellular organisms → Bacteria	11659	Open in IMG/M
3300019888\|Ga0193751_1032486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2425	Open in IMG/M
3300020070\|Ga0206356_10305556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300020082\|Ga0206353_12057278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	737	Open in IMG/M
3300021445\|Ga0182009_10125346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1198	Open in IMG/M
3300021445\|Ga0182009_10206312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	959	Open in IMG/M
3300022467\|Ga0224712_10131657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300024186\|Ga0247688_1007674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300024275\|Ga0247674_1027058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
3300024331\|Ga0247668_1112800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300025918\|Ga0207662_10453202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	877	Open in IMG/M
3300025921\|Ga0207652_10239035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1637	Open in IMG/M
3300025939\|Ga0207665_10322857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1159	Open in IMG/M
3300026095\|Ga0207676_11636750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300026300\|Ga0209027_1208218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	629	Open in IMG/M
3300026343\|Ga0209159_1256793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300027773\|Ga0209810_1000715	All Organisms → cellular organisms → Bacteria	64448	Open in IMG/M
3300028705\|Ga0307276_10045091	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300031366\|Ga0307506_10321376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300031446\|Ga0170820_14413476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300031544\|Ga0318534_10051263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2310	Open in IMG/M
3300031938\|Ga0308175_100351724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1523	Open in IMG/M
3300031938\|Ga0308175_103222452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300031954\|Ga0306926_10422115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1645	Open in IMG/M
3300031996\|Ga0308176_11114627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300032067\|Ga0318524_10120096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1314	Open in IMG/M
3300032074\|Ga0308173_11149823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300032074\|Ga0308173_11189820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300032180\|Ga0307471_101938552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300032770\|Ga0335085_10273449	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300032770\|Ga0335085_11122715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	841	Open in IMG/M
3300032782\|Ga0335082_10061782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3824	Open in IMG/M
3300032782\|Ga0335082_10166781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2118	Open in IMG/M
3300032782\|Ga0335082_10254412	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300032783\|Ga0335079_10322503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1681	Open in IMG/M
3300032829\|Ga0335070_10221049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1874	Open in IMG/M
3300032897\|Ga0335071_10184473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2040	Open in IMG/M
3300032898\|Ga0335072_11301740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300033803\|Ga0314862_0186043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	515	Open in IMG/M
3300033805\|Ga0314864_0175963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	553	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.38%
Host-Associated	Host-Associated	8.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.52%
Plants	Host-Associated → Plants	8.62%
Aquatic	Environmental → Aquatic	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.93%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.45%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.72%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.86%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005905	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_105	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100669982	3300000597	Forest Soil	VPSVATYNAGEKLSMFVLAAAVLAGAIGSAFAAGWVIGRILL*
JGI1027J12803_1053120582	3300000955	Soil	VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
A3PFW1_100333803	3300001535	Permafrost	VASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL*
soilH2_102832292	3300003324	Sugarcane Root And Bulk Soil	MATTATHRPGEKLSIFALAAFVLAGAIGSAFAAGFLIGRMLL*
Ga0062589_1022641662	3300004156	Soil	VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0062590_1016340942	3300004157	Soil	VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0062592_1006536792	3300004480	Soil	VPSTATYNTSESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0066395_103033093	3300004633	Tropical Forest Soil	VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL*
Ga0062591_1010409093	3300004643	Soil	THNPPESRAEKLSMFVLAFGVLTGAIGSAFAAGWVIGRMLL*
Ga0062591_1023293002	3300004643	Soil	VPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL*
Ga0066673_101215324	3300005175	Soil	ATHSPPESRAQKLSMFAFAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0066673_102348241	3300005175	Soil	VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL*
Ga0066690_101010454	3300005177	Soil	YVASTATYNPPAGRYERLSMFALAATVLVGAIGSAFAAGWLIGRMLL*
Ga0066688_108124442	3300005178	Soil	VASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0066388_1018384912	3300005332	Tropical Forest Soil	VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWVIGRILL*
Ga0066388_1035368382	3300005332	Tropical Forest Soil	VPSAATYNAGEKLSMFVLAAAILAGAIGSAFAAGWVIGRILL*
Ga0070682_1000407991	3300005337	Corn Rhizosphere	VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRM
Ga0070682_1008007192	3300005337	Corn Rhizosphere	VPSTATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0070660_1013965802	3300005339	Corn Rhizosphere	VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPV*
Ga0070709_102749772	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VLSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0066687_101216784	3300005454	Soil	VASTATYNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL*
Ga0070699_1017166862	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VASTVTHNPGEKLAMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0073909_106762621	3300005526	Surface Soil	VPSTATYNPPESRAEKLSMLVLAFAVLAVAIGSAFAAGWVIGRMLL*
Ga0070739_100028733	3300005532	Surface Soil	VVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL*
Ga0068853_1009215781	3300005539	Corn Rhizosphere	TATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0070686_1017182702	3300005544	Switchgrass Rhizosphere	VPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP*
Ga0070693_1014564342	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP*
Ga0066703_101298604	3300005568	Soil	RTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0068856_1000817173	3300005614	Corn Rhizosphere	VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPL*
Ga0070702_1013831631	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	PPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0066903_1011894323	3300005764	Tropical Forest Soil	VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGR
Ga0075269_100218213	3300005905	Rice Paddy Soil	NATHSAGEVLSMFILATIVLAGAIGSAFAAGFVIGRILL*
Ga0070717_116328391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VPSSATYNVGEKLSMIALAAIVLAAAIGSAFAAGWVIGR
Ga0070716_1009582942	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL*
Ga0066660_109203523	3300006800	Soil	YNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL*
Ga0079221_103532662	3300006804	Agricultural Soil	VASSATHNPRAGRYEKLSMFLLAFVVLGGAIGSAFAAGFFIGRILL*
Ga0079220_117591021	3300006806	Agricultural Soil	TYNAGEKLSMFVLAALVLAAAIGSAFAAGWVIGRILL*
Ga0075433_112931551	3300006852	Populus Rhizosphere	VPSPATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0075425_1029644122	3300006854	Populus Rhizosphere	TATTYNAGEKLSMFVLAAAVLAAAIGSAFAAGWIIGRILL*
Ga0066709_1010574862	3300009137	Grasslands Soil	MTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0066709_1015421051	3300009137	Grasslands Soil	VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAACWVIGRILL*
Ga0105248_106662321	3300009177	Switchgrass Rhizosphere	TATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0126380_105735973	3300010043	Tropical Forest Soil	LRISVPSTATYSPPISRQEKLSMFVLAAVVLVAVVGTAFAAGWLIGRILL*
Ga0126384_118879861	3300010046	Tropical Forest Soil	PATHKVGDKLTMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126318_104839372	3300010152	Soil	ATYNAGEKLSIFALAALVLAAAIGSAFAAGWVIGRILL*
Ga0126372_100057236	3300010360	Tropical Forest Soil	VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGRILL*
Ga0126378_106116763	3300010361	Tropical Forest Soil	MPGPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126377_121740052	3300010362	Tropical Forest Soil	VPSTATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL*
Ga0134066_103988602	3300010364	Grasslands Soil	VPSTATYNPPKDKADKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL*
Ga0134128_1000798911	3300010373	Terrestrial Soil	VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL*
Ga0126381_1010940021	3300010376	Tropical Forest Soil	MPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126381_1021313303	3300010376	Tropical Forest Soil	VPSAATYNAGEKLSMFILAAAVLAGSIGSAFAAGWVIGRILL*
Ga0126381_1022406591	3300010376	Tropical Forest Soil	MPRPATDKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0134126_102502702	3300010396	Terrestrial Soil	VAKTSAYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL*
Ga0137383_102896532	3300012199	Vadose Zone Soil	VTHSRPESWYTKLSIFALATAVLASAIGSAFAAGWVIGRMLL*
Ga0137383_107210882	3300012199	Vadose Zone Soil	VARTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0137379_118273881	3300012209	Vadose Zone Soil	VASNATHNPPESRHEKLAMFALAALVLAGAIGTAFAAGWVIGRMVL*
Ga0137377_113117221	3300012211	Vadose Zone Soil	VASTATHNPPESRHEKLAMFALAALVLVGAIGTAFAAGWVIGRIVL*
Ga0134061_11206302	3300012399	Grasslands Soil	SGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL*
Ga0157301_103354861	3300012911	Soil	VPSTATYNPPESKAEKLSMFVLAFAVLAGAIGSAFAAGWVIGRILL*
Ga0126375_110776732	3300012948	Tropical Forest Soil	VPSAATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL*
Ga0164298_108487232	3300012955	Soil	VGEKLSMIALAIFVLAAATGSAFAAGCVIGRMLL*
Ga0164301_117259762	3300012960	Soil	VPSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0134077_103960522	3300012972	Grasslands Soil	VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRMLL*
Ga0134110_100846971	3300012975	Grasslands Soil	TATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0164306_119651052	3300012988	Soil	VPSFATYNAGEKLSMFILAAAVLAAAIGSAFAAGWIIGRILL*
Ga0164305_113259691	3300012989	Soil	TTTYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0120179_10559541	3300013763	Permafrost	APCTFSRSSVASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL*
Ga0120158_102974912	3300013772	Permafrost	VASTATYNPPESWHEKLAIFALAALVLAGAVGSAFAAGWVIGRIVL*
Ga0182008_103959842	3300014497	Rhizosphere	VASNATYNHGEKLSMFVLAALVLVGSIGSAFAAGFVIGRILL*
Ga0182006_13270052	3300015261	Rhizosphere	VPPTATHSAGEKLSIFVLAALVLAAAIGSAFAAGWVIGRMLL*
Ga0182005_12883692	3300015265	Rhizosphere	VATTAIYNRPLGRYEKLSMWALAATVLVVAIGSAFAAGFVIGRILL*
Ga0182034_104211322	3300016371	Soil	MPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRIFL
Ga0187779_107251042	3300017959	Tropical Peatland	MASAATYNHGEKPSMFLLAAVVLVGAVGSAFAAAWTIGRILS
Ga0187780_103701562	3300017973	Tropical Peatland	MASAATYNHGEKPSMFLLVSVVLVGAVGSAFAAAWTIGRILS
Ga0066655_114383761	3300018431	Grasslands Soil	PDPREKLSMFALAAFVLAGAIGSAFAAGWMIGRILL
Ga0193751_10022968	3300019888	Soil	VASTATYNPPESRHEKLAIFALAALVLAAAVGTAFAAGWVIGRIVL
Ga0193751_10324862	3300019888	Soil	VASTATDNPPGSRYQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL
Ga0206356_103055563	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0206353_120572782	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLL
Ga0182009_101253463	3300021445	Soil	VPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL
Ga0182009_102063122	3300021445	Soil	VPPTATTYNAGEKLSLFVLAALVLAAAIGSAFAAGWVIGRMLL
Ga0224712_101316571	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0247688_10076742	3300024186	Soil	VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMRV
Ga0247674_10270581	3300024275	Soil	VLSTATYNAGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL
Ga0247668_11128002	3300024331	Soil	NAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0207662_104532022	3300025918	Switchgrass Rhizosphere	VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL
Ga0207652_102390351	3300025921	Corn Rhizosphere	VPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP
Ga0207665_103228573	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL
Ga0207676_116367501	3300026095	Switchgrass Rhizosphere	VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGMALPFL
Ga0209027_12082182	3300026300	Grasslands Soil	VASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL
Ga0209159_12567931	3300026343	Soil	THSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL
Ga0209810_100071540	3300027773	Surface Soil	VARTVVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL
Ga0307276_100450913	3300028705	Soil	TATYNAPEGKHERLSMFVLAFAVLAGAIGSAFAAGWVIGRMLL
Ga0307506_103213762	3300031366	Soil	VASRVIHSPGGKLSMFALAAVVLAAAIGSAFAAGWVIGRMLL
Ga0170820_144134761	3300031446	Forest Soil	NDPKEKLSMFVPAACVLAAVVGTAFARGFMIGKILL
Ga0318534_100512632	3300031544	Soil	MPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308175_1003517244	3300031938	Soil	VPSSETYNSGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL
Ga0308175_1032224522	3300031938	Soil	VPPTATHSPGTDGHEKLSMFALAFVVLVAAIGSAFAAGWVIGRMLL
Ga0306926_104221154	3300031954	Soil	TSMPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308176_111146271	3300031996	Soil	VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL
Ga0318524_101200961	3300032067	Soil	ATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308173_111498232	3300032074	Soil	WRSWSSEVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL
Ga0308173_111898201	3300032074	Soil	VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIG
Ga0307471_1019385522	3300032180	Hardwood Forest Soil	VPNSATYKVGEKLSMFILAAAVLATAIGSAFGAGWIIGRILL
Ga0335085_102734492	3300032770	Soil	MTSSATHNPGGKLSIFALAMVVLLGAVGSAFAAGWVIGRMLL
Ga0335085_111227152	3300032770	Soil	VPNTATYNAGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL
Ga0335082_100617823	3300032782	Soil	VARTATYNPSEKLSMFALAAFVFVAAIGSAFAAGWMIGRMLL
Ga0335082_101667815	3300032782	Soil	VPSTATYNVGDKLSMIALAVFVLAAATGSAFAAGWVIGRMLL
Ga0335082_102544123	3300032782	Soil	VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL
Ga0335079_103225032	3300032783	Soil	MPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL
Ga0335070_102210493	3300032829	Soil	VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVI
Ga0335071_101844731	3300032897	Soil	VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWV
Ga0335072_113017402	3300032898	Soil	MPRPATHKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL
Ga0314862_0186043_172_300	3300033803	Peatland	VPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGCVIGRILL
Ga0314864_0175963_194_322	3300033805	Peatland	VPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGWVIGRILL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079095

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences