Scaffold Ga0209810

Basic Information
Taxon OID	3300027773 Open in IMG/M
Scaffold ID	Ga0209810_1000079 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209810_1000079 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	291971
Total Scaffold Genes	318 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	199 (62.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

291971

Total Scaffold Genes

318 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

199 (62.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003606	Metagenome / Metatranscriptome	477	Y
F005548	Metagenome / Metatranscriptome	397	Y
F005991	Metagenome / Metatranscriptome	384	Y
F007088	Metagenome / Metatranscriptome	358	Y
F020333	Metagenome / Metatranscriptome	224	Y
F021819	Metagenome / Metatranscriptome	217	Y
F052789	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_1000079139	F052789	AGG	VSTALGLLAFVAYVLVIVGVAAAVTWIVVRVTPTHKPDGSAQS
Ga0209810_1000079260	F003606	GAG	VRPRSANEWRDFWRDGGERELHARLGEFAPYSVRIATLLGSNAPERALVAELGRIREHELGGPPDPETDAAVAARIYAWFEAASLAR
Ga0209810_1000079273	F020333	GGAGG	MIGVGIAFIIVGIIFLFIIPWVGIAVGIVGLVLAILWVAGFGRRAVERDTPADQPRL
Ga0209810_1000079285	F021819	N/A	VLAAVPHAVVTALLLVAAIGPVLAFAWFAWWFLRAGKRYDDRERAAGRRPPPGF
Ga0209810_1000079296	F007088	GGAG	VSRPMQLFLRDPSYTDRLAAFLSSVGRPAVVGAPDRVDLDASADDPQGLELELHLRVWRVLYPDADVELAGLAP
Ga0209810_1000079297	F005548	N/A	VLRWLLSLFGRGRKHAASSIREAEAYARSYGERSGEIVSVVRQEPKPIPRRTGDMTGELLRLAFEAKLDARGKATT
Ga0209810_100007955	F005991	GAGG	MRSYGTYDASRGLTLALAAALAGLALWGAAEVGTQTTGRFWVAMAIVAGAGLLLALANHVGTWTKGLRMRISPSTFVLAFLPVLVCVGWILVATQPGTGWQEGRLDSWSNSIGILGLVKTIALWHGVLAFGLGLVLGLSFDGVPAPVEEPGPAYAGAAAPATDEPVAAERRRTRRRRPVADAPPAGGPGRPTDAPAATPTDETTRTHSRVPGP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209810_1000079

Overview

Ecosystem & Geography

Associated Families

Sequences