Scaffold Ga0209810

Basic Information
Taxon OID	3300027773 Open in IMG/M
Scaffold ID	Ga0209810_1000015 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209810_1000015 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	608252
Total Scaffold Genes	662 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	404 (61.03%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

608252

Total Scaffold Genes

662 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

404 (61.03%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002509	Metagenome / Metatranscriptome	553	Y
F002755	Metagenome / Metatranscriptome	532	Y
F002992	Metagenome / Metatranscriptome	515	Y
F003246	Metagenome / Metatranscriptome	498	Y
F004297	Metagenome / Metatranscriptome	445	Y
F004844	Metagenome / Metatranscriptome	421	Y
F007034	Metagenome / Metatranscriptome	359	Y
F010130	Metagenome / Metatranscriptome	308	Y
F014125	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_1000015207	F010130	N/A	VRNAELAPAFCVALAVELAHLRWIVLTQWKCRTCREPHIDCACKPAWVRYFL
Ga0209810_1000015291	F002509	GAG	VVTHLSHWLTRQLGNDELRRKLEDVDVDELPPAGRDMVRELVQELGVAVPGERGQLEVLVRETVETLVYGE
Ga0209810_1000015349	F004297	GGA	MWTGLYAGLGAASTMVSRRLASKIWRVMTGEEPPTKK
Ga0209810_1000015410	F014125	GAG	VQPEFTLVGDDRIIGSTIWTDEDGRRTERYQVLTIRDGKIVDLQGCETRRQAERFARRRATARTSGAV
Ga0209810_1000015411	F007034	N/A	MEAILDQLRAAADALSRGDPRPFASLLADDAEWRGVPSGHLWWKRTPS
Ga0209810_1000015502	F003246	AGG	VTSSTRDTWSAAEAVAGLLAACAIVLGLLELVYRPFRLAPVALLLALIATVMSRSQQRLVMTAFAAIGICFVVGTALQVLTHHPLF
Ga0209810_1000015546	F004844	N/A	MHTMSRSGGRLSVFLFALFLLAFFLAVTFAAGYAVGKILL
Ga0209810_1000015563	F002992	N/A	MSLRTSPIVEHAALPGGGSVTVWVGVPDDPYIDDKSQLTTVDVQLHEGNNVVASMSTVLDPHQTSEGRQLAREVKAALEAGEIGLHAEDLEPFADRVR
Ga0209810_1000015623	F002755	AGAAGG	MPRRSAVTGLLLAAGSVAGSVLVRRRAARRRERVDLYGDDGSVQSYAEGSPEADRLLPIARELLSTAPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209810_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences