Scaffold Ga0209086_10109259

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10109259
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1401
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010081	Metagenome / Metatranscriptome	308	Y
F045085	Metagenome / Metatranscriptome	153	Y
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_101092591	F010081	N/A	SIIKKYCLKMQEVDKTKSIPMIVKDLDHIVYDMYRQLYGLRDIRSSNYNLNSFTAENKKGHCS
Ga0209086_101092594	F045085	N/A	MNKLYKVIDLTVGLVFGSIFAIGIILVITIFFVVLIPSIFYFTVREVLKQLTKK
Ga0209086_101092595	F055439	N/A	MNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVVETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGIDHLSCLTTEELKKSNPLKNKDEFHEIKNQFSNMKIYIKQLEEHIQRLEKQYDEPTN