NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10025718

Scaffold Ga0209086_10025718


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10025718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3596
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F007363Metagenome / Metatranscriptome352Y
F009143Metagenome / Metatranscriptome322Y
F014129Metagenome / Metatranscriptome265Y
F045755Metagenome / Metatranscriptome152N
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1002571810F007363N/AMRGYSIVDLLVDQYYAPTSLRRRFNGGIINFAEKREDTYPASGWQDYAIRYRPTNSLQDSWATVTVRVED
Ga0209086_1002571811F014129AGGTGGMTTLNIREITLENVSADEANLIVCVFCSDYSSEFYCVKCNEYKGLMTLGEWLSYTQESWL
Ga0209086_1002571812F001562GGGGGMNKSQFEKDLEIKESFIDLLNDIYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEDET
Ga0209086_1002571815F009143GGAGMMTKWDTIQADVADAYVYLEEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE
Ga0209086_100257183F076101GGAMYKITLSYDGNAPHWQGDYYDEMEAWSAFFKFTDWGFADEFSTVNIYTPELKCYTKNFYRSGMVVTK
Ga0209086_100257184F045755AGGAGMSEIAGMWICDNCDTLAIVSVETDTILITQCKCVTNERETNV
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