Basic Information | |
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Taxon OID | 3300027770 Open in IMG/M |
Scaffold ID | Ga0209086_10004465 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10379 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001733 | Metagenome / Metatranscriptome | 644 | Y |
F031872 | Metagenome / Metatranscriptome | 181 | N |
F050378 | Metagenome / Metatranscriptome | 145 | N |
F097357 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209086_100044651 | F050378 | N/A | MSPEMWVQIGIQAFITTMSIGAAWVALQIRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAVINR |
Ga0209086_1000446510 | F097357 | N/A | VAQSILYTSVRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF |
Ga0209086_100044652 | F001733 | GGAGG | MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK |
Ga0209086_100044657 | F031872 | GAGG | MVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQADTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQTVSSTTPPFFLNRSSVSSSIDVSQDGRVDNGISQLYVATISP |
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