NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10004465

Scaffold Ga0209086_10004465


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10004465 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10379
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F031872Metagenome / Metatranscriptome181N
F050378Metagenome / Metatranscriptome145N
F097357Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100044651F050378N/AMSPEMWVQIGIQAFITTMSIGAAWVALQIRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAVINR
Ga0209086_1000446510F097357N/AVAQSILYTSVRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF
Ga0209086_100044652F001733GGAGGMNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTNANSLKVGK
Ga0209086_100044657F031872GAGGMVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQADTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQTVSSTTPPFFLNRSSVSSSIDVSQDGRVDNGISQLYVATISP

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