Metagenome / Metatranscriptome Family F097357

Overview

Basic Information

• Family ID: F097357
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 104
• Average Sequence Length: 54 residues
• Representative Sequence: VAQKILYTSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
• Number of Associated Samples: 74
• Number of Associated Scaffolds: 104

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 46.15 %
• % of genes near scaffold ends (potentially truncated): 29.81 %
• % of genes from short scaffolds (< 2000 bps): 71.15 %
• Associated GOLD sequencing projects: 66
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (85.577 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (19.231 % of family members)
• Environment Ontology (ENVO): Unclassified (46.154 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (49.038 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 77.19%
  β-sheet: 0.00%
  Coil/Unstructured: 22.81%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF05065	Phage_capsid	1.92
PF04586	Peptidase_S78	0.96
PF12708	Pectate_lyase_3	0.96
PF01381	HTH_3	0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	1.92
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
All Organisms	root	All Organisms	14.42 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Viruses	superkingdom	All Organisms → Viruses	14.42 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.73 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.73 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.73 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.73 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	6.73 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.69 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6.73 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000756|JGI12421J11937_10110036	Not Available	736
3300003277|JGI25908J49247_10032103	All Organisms → Viruses → Predicted Viral	1478
3300003393|JGI25909J50240_1018846	Not Available	1603
3300003413|JGI25922J50271_10081837	Not Available	693
3300003860|Ga0031658_1004851	All Organisms → Viruses → Predicted Viral	2348
3300005662|Ga0078894_11608623	Not Available	536
3300006039|Ga0073915_10028558	Not Available	951
3300006040|Ga0073914_10004603	All Organisms → Viruses → Predicted Viral	2325
3300006484|Ga0070744_10000797	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9326
3300006484|Ga0070744_10014999	Not Available	2297
3300006484|Ga0070744_10067921	Not Available	1036
3300006484|Ga0070744_10081744	Not Available	936
3300006484|Ga0070744_10092775	Not Available	873
3300006802|Ga0070749_10027425	All Organisms → Viruses → Predicted Viral	3574
3300006917|Ga0075472_10134048	All Organisms → Viruses → Predicted Viral	1214
3300007169|Ga0102976_1180862	Not Available	1996
3300007171|Ga0102977_1111829	All Organisms → Viruses → Predicted Viral	1872
3300007177|Ga0102978_1161485	All Organisms → Viruses → Predicted Viral	4346
3300007548|Ga0102877_1114166	Not Available	768
3300007559|Ga0102828_1006447	Not Available	2312
3300007559|Ga0102828_1046626	Not Available	1001
3300007559|Ga0102828_1061929	Not Available	880
3300007559|Ga0102828_1123364	Not Available	639
3300007559|Ga0102828_1149102	Not Available	586
3300007708|Ga0102859_1008926	Not Available	2452
3300007708|Ga0102859_1128643	Not Available	737
3300008055|Ga0108970_11223137	Not Available	1802
3300008448|Ga0114876_1040143	Not Available	2203
3300008448|Ga0114876_1216914	Not Available	629
3300009002|Ga0102810_1097626	Not Available	916
3300009056|Ga0102860_1061667	Not Available	1018
3300009058|Ga0102854_1087835	Not Available	890
3300009152|Ga0114980_10582687	Not Available	633
3300009152|Ga0114980_10772468	Not Available	535
3300009152|Ga0114980_10806548	Not Available	522
3300009155|Ga0114968_10067889	Not Available	2243
3300009155|Ga0114968_10255493	Not Available	994
3300009161|Ga0114966_10316976	Not Available	938
3300009161|Ga0114966_10446153	Not Available	748
3300009163|Ga0114970_10051613	Not Available	2656
3300009165|Ga0105102_10335095	Not Available	791
3300009165|Ga0105102_10797421	Not Available	537
3300009183|Ga0114974_10045881	Not Available	2949
3300009185|Ga0114971_10823752	Not Available	502
3300009194|Ga0114983_1001504	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9193
3300010160|Ga0114967_10014553	Not Available	5731
3300010354|Ga0129333_10699643	Not Available	871
3300010885|Ga0133913_10414781	Not Available	3558
3300012348|Ga0157140_10000034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	31121
3300012348|Ga0157140_10005199	Not Available	1393
3300012665|Ga0157210_1007147	Not Available	2128
3300013006|Ga0164294_10699984	Not Available	684
3300013087|Ga0163212_1041757	Not Available	1567
(restricted) 3300013126|Ga0172367_10063814	Not Available	2803
3300017754|Ga0181344_1158917	Not Available	644
3300017766|Ga0181343_1061108	Not Available	1096
3300017780|Ga0181346_1027672	Not Available	2360
3300017784|Ga0181348_1223416	Not Available	664
3300017785|Ga0181355_1296375	Not Available	608
3300019784|Ga0181359_1092925	Not Available	1116
3300019784|Ga0181359_1173308	Not Available	720
3300019784|Ga0181359_1214416	Not Available	610
3300020048|Ga0207193_1063399	Not Available	3695
3300020048|Ga0207193_1195110	Not Available	1610
3300020160|Ga0211733_11019907	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16713
3300021336|Ga0210307_1276391	Not Available	541
3300021962|Ga0222713_10626146	Not Available	624
3300022179|Ga0181353_1020484	Not Available	1738
3300022179|Ga0181353_1120601	Not Available	627
3300022190|Ga0181354_1118356	Not Available	853
3300022407|Ga0181351_1160472	Not Available	798
3300024289|Ga0255147_1035542	Not Available	1000
3300024346|Ga0244775_10004774	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13923
3300024346|Ga0244775_10403186	Not Available	1124
3300024346|Ga0244775_10534670	Not Available	955
3300024348|Ga0244776_10081105	Not Available	2462
3300024348|Ga0244776_10172590	Not Available	1559
3300024348|Ga0244776_10866151	Not Available	539
3300024864|Ga0255271_1077296	Not Available	729
3300027320|Ga0208923_1057006	Not Available	694
3300027365|Ga0209300_1020632	Not Available	1467
3300027631|Ga0208133_1082331	Not Available	757
3300027736|Ga0209190_1040320	Not Available	2432
3300027754|Ga0209596_1024293	Not Available	3552
3300027754|Ga0209596_1025437	Not Available	3448
3300027770|Ga0209086_10004465	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10379
3300027770|Ga0209086_10031281	Not Available	3176
3300027770|Ga0209086_10373538	Not Available	582
3300027798|Ga0209353_10307550	Not Available	670
3300027808|Ga0209354_10123452	Not Available	1057
3300027808|Ga0209354_10397675	Not Available	536
3300027973|Ga0209298_10014162	Not Available	4138
3300027974|Ga0209299_1004371	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7249
3300031707|Ga0315291_10460888	All Organisms → Viruses → Predicted Viral	1191
3300031787|Ga0315900_10592181	Not Available	813
3300031952|Ga0315294_10757280	Not Available	843
3300032053|Ga0315284_11112710	Not Available	877
3300032053|Ga0315284_12424288	Not Available	514
3300032173|Ga0315268_12248126	Not Available	559
3300032275|Ga0315270_11146034	Not Available	517
3300033993|Ga0334994_0249154	Not Available	930
3300033993|Ga0334994_0340423	Not Available	746
3300034110|Ga0335055_0189159	Not Available	916
3300034116|Ga0335068_0077050	Not Available	1901

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.04%
Host-Associated	Host-Associated	0.96%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.19%
Terrestrial	Environmental → Terrestrial	3.85%
Plants	Host-Associated → Plants	0.96%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	67.31%
Marine	Environmental → Aquatic → Marine	27.88%
Soil	Environmental → Terrestrial → Soil	1.92%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.92%
Leaf	Host-Associated → Plants → Leaf	0.96%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	38.46%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.15%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.62%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.88%
Coastal	Environmental → Aquatic → Marine → Coastal	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
River	Environmental → Aquatic → Freshwater → River	1.92%
Sand	Environmental → Terrestrial → Soil → Sand	1.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.96%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.77%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.23%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	15.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.69%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.92%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.92%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.96%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	19.23%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	18.27%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	15.38%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	8.65%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.73%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.77%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.85%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.92%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.92%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.92%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	1.92%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.96%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.96%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.96%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental
3300003413	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD	Environmental
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300006039	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_30-Apr-14	Environmental
3300006040	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_30-Apr-14	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental
3300007169	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects	Environmental
3300007171	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects	Environmental
3300007177	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects	Environmental
3300007548	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007708	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02	Environmental
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental
3300009194	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT	Environmental
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300012348	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44	Environmental
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental
3300013087	Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L	Environmental
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental
3300017766	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300021336	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300024289	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300024864	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8h (Metagenome Metatranscriptome)	Environmental
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental
3300027365	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT (SPAdes)	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental
3300027973	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)	Environmental
3300027974	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034110	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171	Environmental
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101100362	3300000756	Freshwater And Sediment	VAQKILYNSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
JGI25908J49247_100321032	3300003277	Freshwater Lake	TSVRHLKRHPRETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAKRTL*
JGI25909J50240_10188462	3300003393	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTFDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
JGI25922J50271_100818372	3300003413	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0031658_10048512	3300003860	Freshwater Lake Sediment	VAQKILYCSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0078894_116086231	3300005662	Freshwater Lake	SPKRLNGVAQKILYCSVRHLKRHPRETDLTFEEFAEVAWAGEVWENQITEIVKAVMSVLAKRTL*
Ga0073915_100285582	3300006039	Sand	VLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQVVEIVKAVISVLAKRTL*
Ga0073914_100046032	3300006040	Sand	VLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQIVEIVKAVISVLAKRTL*
Ga0070744_100007973	3300006484	Estuarine	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVISKRTF*
Ga0070744_100149993	3300006484	Estuarine	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF*
Ga0070744_100679212	3300006484	Estuarine	VAQTILYTSVRHLKRHPRETDFSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL*
Ga0070744_100817442	3300006484	Estuarine	VAQKILYNSVRHLKRHPRETDLSFDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0070744_100927751	3300006484	Estuarine	VAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKR
Ga0070749_100274252	3300006802	Aqueous	VAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQITEIVKAVMSVMAKRTP*
Ga0075472_101340482	3300006917	Aqueous	VRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0102976_11808625	3300007169	Freshwater Lake	VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWTGEVWENQIVEIVKAVMSVLAKRTF*
Ga0102977_11118293	3300007171	Freshwater Lake	VRHLKRHPSETDLSLDQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF*
Ga0102978_11614857	3300007177	Freshwater Lake	VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF*
Ga0102877_11141662	3300007548	Estuarine	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0102828_10064472	3300007559	Estuarine	VAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0102828_10466262	3300007559	Estuarine	VRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL*
Ga0102828_10619292	3300007559	Estuarine	VAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQITEIVKAVMSVLAKRTL*
Ga0102828_11233643	3300007559	Estuarine	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKR
Ga0102828_11491022	3300007559	Estuarine	LKRHPRETDLSLDELAEVAWAAEVWDNQIVEIVKAVMSVISKRTF*
Ga0102859_10089263	3300007708	Estuarine	VRHLKRHPRETDLTIDEFSEVAWAGEVWENNIVEIVKAVMSVIAKRTI*
Ga0102859_11286431	3300007708	Estuarine	LVCCGCSPKRLGGLAQTVLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQIVEIVKAVISVLAKRTL*
Ga0108970_112231374	3300008055	Estuary	VAQKILYCSVRHLKRHPRETDLTIEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0114876_10401432	3300008448	Freshwater Lake	VRHLKRHPSETDLSLDEFAEVAWAGEVWENQLVEIVKAVMSVLAKRTI*
Ga0114876_12169141	3300008448	Freshwater Lake	VRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSV
Ga0102810_10976262	3300009002	Estuarine	RSGGRRSPKRLGGVAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0102860_10616671	3300009056	Estuarine	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQIVEIVKAIMSVMAKRTL*
Ga0102854_10878351	3300009058	Estuarine	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVL
Ga0114980_105826872	3300009152	Freshwater Lake	VRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAK
Ga0114980_107724682	3300009152	Freshwater Lake	VAQTILYTSVRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL*
Ga0114980_108065481	3300009152	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0114968_100678892	3300009155	Freshwater Lake	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF*
Ga0114968_102554931	3300009155	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAV
Ga0114966_103169762	3300009161	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTLDEYAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0114966_104461532	3300009161	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0114970_100516133	3300009163	Freshwater Lake	VRHLKRHPRETDLSLNELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF*
Ga0105102_103350952	3300009165	Freshwater Sediment	VRHLKRHPRETDLTLEEFAEVAWAGEVWEEQIVEIVKAVMSVLAKRTL*
Ga0105102_107974212	3300009165	Freshwater Sediment	VAQKIVYNSVRHLKRHPSELNLSMEQWAEVIWAGEVWDNQITEIVKAVMSVLAKRTL*
Ga0114974_100458813	3300009183	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLSLDEFAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF*
Ga0114971_108237522	3300009185	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLEEFTEVAWAGEVWENQIVEIVKAVMSVLAKRTL*
Ga0114983_10015046	3300009194	Deep Subsurface	VRHLKRHPRETDFSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL*
Ga0114967_100145537	3300010160	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF*
Ga0129333_106996432	3300010354	Freshwater To Marine Saline Gradient	VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0133913_104147815	3300010885	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTLEEFAEVAWAGEVWEEQIVEIVKAVMSVLAKRTL*
Ga0157140_1000003439	3300012348	Freshwater	VAQKILYNSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0157140_100051991	3300012348	Freshwater	TILYTSVRHLKRHPRETDLSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL*
Ga0157210_10071472	3300012665	Freshwater	VRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTF*
Ga0164294_106999841	3300013006	Freshwater	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKA
Ga0163212_10417572	3300013087	Freshwater	VRHLKRHPSETDLSLEQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
(restricted) Ga0172367_100638147	3300013126	Freshwater	VAQKILYCSVRHLKRHPSETDLSLEQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI*
Ga0181344_11589171	3300017754	Freshwater Lake	TILYTSVRHLKRHPRETDVSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0181343_10611082	3300017766	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQITEIVKAVMSVLAKRTL
Ga0181346_10276723	3300017780	Freshwater Lake	VAQTILYTSVRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTF
Ga0181348_12234161	3300017784	Freshwater Lake	KILYNSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0181355_12963752	3300017785	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAK
Ga0181359_10929252	3300019784	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTFDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0181359_11733082	3300019784	Freshwater Lake	VRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI
Ga0181359_12144162	3300019784	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0207193_10633992	3300020048	Freshwater Lake Sediment	VAQRILYTSVRHLKRHPSETDLTLDEFSEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0207193_11951102	3300020048	Freshwater Lake Sediment	VAQTILYTSVRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0211733_1101990718	3300020160	Freshwater	VAQKILYNSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0210307_12763912	3300021336	Estuarine	VAQKILYNSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRT
Ga0222713_106261462	3300021962	Estuarine Water	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQIVEIVKAIMSVMAKRTL
Ga0181353_10204841	3300022179	Freshwater Lake	SVRHLKRHPRETDLTLEEFAEVAWAGEVWEEQIVEIVKAVMSVLAKRTL
Ga0181353_11206011	3300022179	Freshwater Lake	LYCSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI
Ga0181354_11183562	3300022190	Freshwater Lake	KRLGGVAQKILYCSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI
Ga0181351_11604722	3300022407	Freshwater Lake	VRHLKRHPRETDLSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTF
Ga0255147_10355422	3300024289	Freshwater	VAQKILYCSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF
Ga0244775_1000477413	3300024346	Estuarine	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVISKRTF
Ga0244775_104031862	3300024346	Estuarine	VRHLKRHPRETDFSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0244775_105346702	3300024346	Estuarine	VAQKILYCSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQITEIVKAVMSVLAKRTL
Ga0244776_100811053	3300024348	Estuarine	VRHLKRHPRETDLTIDEFSEVAWAGEVWENNIVEIVKAVMSVIAKRTI
Ga0244776_101725902	3300024348	Estuarine	SGRRSPKRLTGVAQKILYNSVRHLKRHPRETDLSFDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0244776_108661512	3300024348	Estuarine	LYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQIVEIVKAVISVLAKRTL
Ga0255271_10772962	3300024864	Freshwater	VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF
Ga0208923_10570062	3300027320	Estuarine	RLGGLAQTVLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQVVEIVKAVISVLAKRT
Ga0209300_10206321	3300027365	Deep Subsurface	VRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF
Ga0208133_10823312	3300027631	Estuarine	RHRASGRRSPKRLTGVAQKILYNSVRHLKRHPRETDLSFDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0209190_10403206	3300027736	Freshwater Lake	VRHLKRHPRETDLSLNELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF
Ga0209596_10242933	3300027754	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0209596_10254373	3300027754	Freshwater Lake	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF
Ga0209086_1000446510	3300027770	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF
Ga0209086_100312813	3300027770	Freshwater Lake	VAQKILYNSVRHLKRHPRETDLTLDEYAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0209086_103735382	3300027770	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0209353_103075502	3300027798	Freshwater Lake	VLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQVVEIVKAVISVLAKRTL
Ga0209354_101234523	3300027808	Freshwater Lake	VAQTILYTSVRHLKRHPRETDLSLDEYAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0209354_103976751	3300027808	Freshwater Lake	GRRSPKRLSGVAQTILYTSVRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0209298_100141623	3300027973	Freshwater Lake	VAQKILYTSVRHLKRHPRETDLTLEEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0209299_10043713	3300027974	Freshwater Lake	VAQSILYTSVRHLKRHPRETDLSLDEFAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF
Ga0315291_104608882	3300031707	Sediment	VRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0315900_105921812	3300031787	Freshwater	CSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTI
Ga0315294_107572803	3300031952	Sediment	VAQKILYNSVRHLKRHPRETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0315284_111127102	3300032053	Sediment	VRHLKRHPRETDLSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTL
Ga0315284_124242882	3300032053	Sediment	VLYTSVRHLKRHPSETDLTLTEMTEVAWAGEVWENQIVEIVKAVISVLAKRTL
Ga0315268_122481262	3300032173	Sediment	VAQRILYTSVRHLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0315270_111460342	3300032275	Sediment	LGGVAQRILYTSVRNLKRHPSETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTF
Ga0334994_0249154_3_131	3300033993	Freshwater	VRHLKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVM
Ga0334994_0340423_604_741	3300033993	Freshwater	LKRHPRETDFSLDEFAEVAWAAEVWDNQIVEIVKAVMSVMAKRTF
Ga0335055_0189159_110_283	3300034110	Freshwater	VAQKILYTSVRHLKRHPSETDLSLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0335068_0077050_802_975	3300034116	Freshwater	VAQRILYTSVRHLKRHPSETDLTLDEFAEIAWAGEVWENQIVEIVKAVMSVLAKRTL