Scaffold Ga0209086_10002099

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10002099
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15782
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F014714	Metagenome / Metatranscriptome	260	N
F018703	Metagenome	233	Y
F029021	Metagenome	189	Y
F061542	Metagenome	131	N
F102505	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000209910	F014714	AGGTGG	LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFDLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0209086_1000209914	F061542	GGA	MICELCRSGGELNKTGQFKRAFTMHKKCKEACGCQHQTGPGVGSRAKEMAEPMRTQYPLE
Ga0209086_1000209916	F102505	GAGG	MRRTSQDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPVPEGIITTTDILQPVSEVVEEVTTTEENKDVK
Ga0209086_100020993	F006842	AGGAG	MKAKPVICGDCLILLSDCAHGANYLQELKTSAERLIQLAKEREEMK
Ga0209086_100020994	F029021	GAGG	MKDLCQFCGWEIARPDWYHRYNNKLICDNCVMDTMSEREREGANG
Ga0209086_100020995	F011756	GAGG	MAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSECEDKRVMREKESK
Ga0209086_100020996	F011646	GAG	LELRNGAVKRIIFYEISDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0209086_100020997	F018703	AGGTGG	LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWIDISGSTKSARSRSR