Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10001048 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10001048 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22779
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (76.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22779

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (76.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F002489	Metagenome / Metatranscriptome	554	Y
F010085	Metagenome / Metatranscriptome	308	Y
F038669	Metagenome / Metatranscriptome	165	Y
F071228	Metagenome / Metatranscriptome	122	N
F084217	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000104814	F038669	AGG	MNNILEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDTSQFVGQLQDNPEYKYLSGRMDTLTEIYIMTYNLAFAINERTVSRG
Ga0209086_1000104819	F000450	AGGCGG	MGDRANFGFVQPNGNTIVLYGHWAGHNMLGKLADAVIKARPRWNDGSYATRIAISQMVADEWNMETGWGLYINEIGDNEHKIAIVDFKQQTFSLHEEAPHNDLDNKVRGMNNDAIFTMDLSVFCEKYAMENILVV
Ga0209086_1000104823	F071228	AGGA	MLDNLETSMSVPHEYNSNLLVTYKKIAGTYAAPEAPEYITQKVVDLEWALEQGRRADDLYNGLKLKVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTVTGTIAFEVTVQVPLDEIDNFDAHYKLGDELSLTSYGSEVEVNDWSIEDTNVDWD
Ga0209086_1000104837	F000447	AGG	MGYIEIFRLDEQGAGWVDLSEATPDELLNLEIGLFNEGAL
Ga0209086_1000104844	F084217	AGGA	MNDYLNYLDEVYDDLVSEYGEGITLAYHVANEKEM
Ga0209086_1000104851	F002489	GGAG	MSETPVNQNLEDNLPMVDYIMLHRIYDLLTLIANEVAGSEKTSKMVEYHEQGYLLGPAPSYTPEGE
Ga0209086_1000104852	F010085	AGGAG	LRQIQYVSQYIALSEESLVPKLECPMDQGSLFCNLDLEDNIFLYCISCDYKNFIGSSFYDNIVLLVDGVKNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10001048

Overview

Ecosystem & Geography

Associated Families

Sequences