Scaffold Ga0209770_10000616

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000616
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19165
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F008402	Metagenome / Metatranscriptome	334	Y
F047662	Metagenome / Metatranscriptome	149	Y
F080645	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100006162	F080645	N/A	MTLTPEQISDLCQAHCYRVIENMDMDDLVSYAVQMMYQSFDKNPGQNDTDVDMLIEDIWVAEGEDDDATSEFIAGIVGSDLADEIMKTTQF
Ga0209770_1000061623	F047662	N/A	MDYETHIDIHQYCPDDRFYYKLKVTDVMNMDYYYEGSALTLDDVMECIQLHLKQHQN
Ga0209770_1000061624	F008402	GAGG	MTLEITNQVRIQEHSDYWYTAEDIHLDVGCEGFTVSYWEFDKEKGDKRIQHICMNKEEALAIADAIYKLFKN
Ga0209770_1000061638	F000744	N/A	MNITETQVNLNVHEIGIILSALQNLENIDQIHIARDYGSAPALYNKLYSVMERMDSSQTGLRYDLTPSF