Scaffold Ga0209770_10000449

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000449
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22825
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (70.13%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013514	Metagenome / Metatranscriptome	270	Y
F017818	Metagenome / Metatranscriptome	238	Y
F032252	Metagenome / Metatranscriptome	180	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048267	Metagenome / Metatranscriptome	148	Y
F074802	Metagenome / Metatranscriptome	119	N
F083877	Metagenome / Metatranscriptome	112	Y
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000044918	F036765	N/A	MTILATELLKLFTKAQKLGLSVNVREDKDGDYVIRIFEMLRPENFDDYLIINQKGESTCDKGAYSFDAMMDVLDEELETKRRDELKAQKRQELIDRLTDEEKELLNLK
Ga0209770_1000044921	F013514	GGA	MIMNLEEIQKYLDDNNITLEEYLRQNMITDEEKKYVDKIWVDAIYKNLGEDT
Ga0209770_1000044936	F074802	GAGG	MTKCTCSYIQIGYKTSNTKNLNPDCPLHGTDSVWYNSPEQVKKRDERSQRLRELYDAARKARENVNEKL
Ga0209770_1000044943	F048267	GGTGG	MTDKEWETALKSMNEGVKKWVNEEIDKIKYNIIKDIINGELK
Ga0209770_1000044947	F032252	GGAGG	MKLYRYKKDGHLYTLYEQLRPFYDLVAVPYFPNQGILAKSKRSISMNDFIVVSER
Ga0209770_1000044953	F101046	N/A	MDFTDYGISLEPEELREIITGKMGFRKCPDCQGDGESWTLHYVLADDLDQSNEQFRDVSAQFAADFDEDNLPPQYSFGECYLYKCDTCKGVGYVPIEGY
Ga0209770_1000044962	F083877	GGTGG	MTEFYVIMLKRQDGKVYADLHKTNQHIYLTIEDAYEEWNNTEHYKEYYHIVKLIASCEDK
Ga0209770_1000044975	F017818	AGTAG	MSGGHFKDAYHDWIDENDTYPSHSHKWIVGLYNKYEGVEALHRYFGPFDTREDAKVFAADYREKYTKSDFITRSKIFPLCEVV