NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000238

Scaffold Ga0209770_10000238


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000238 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32847
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (82.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009954Metagenome / Metatranscriptome310Y
F016152Metagenome / Metatranscriptome249Y
F040102Metagenome162Y
F056610Metagenome / Metatranscriptome137Y
F062764Metagenome130Y
F086829Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000023815F062764N/AMKVAKMKMYEPVVVKSFWRKYNEEQIQAMSEEESMKIIDAHLEQYIIGWQKRNKGKDLPDLAKSTIADVRNKRTNINKSPRITKS
Ga0209770_1000023820F086829AGGAGMAPKKPAPKSTKDQALAVAQSWLRASAAAVLALYISGITDPKVLANAFLAGIAAPLLKALQPNEKEFGITK
Ga0209770_100002383F040102AGGMQDNMKHGKLTKSQYNALKSNLTELPELQQGAASFVTPGRSGSGSPSTERSIGFNVNALDYSMGKELLGTLHKYEALIRRCRSLTPPALLKREATVEKEVAATVSFHLAHLEWTVQQDWVEEFAGLIKELHSKGMATNKRFIEQPRRIPCPTDDCKSHIVMDMDNLLADVVCHKCRTSWTMYRLLTLALNNPDKVFYLDMEAICLWLRITPREVLKIVNAHNVSIKNGLYDFGAITKAKDLS
Ga0209770_1000023835F016152N/AMISVETGIAPTDLMDAPDGILESMVIYLKQRSKDASKQ
Ga0209770_1000023836F009954GGAMDGLHIKVKTVDGFEGTLSLRPRAIVAFEQKFGKGFAKLLSEDQKLEHIYFLAHSALKDAGQVVKPWGDSFLDTLESVELVVDPNLESTETA
Ga0209770_1000023848F056610AGGAGMKLKKPNIDWSLTTEIVGVSLTTYGLFLIFPPISFIALGGFLIWVTEKE
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