NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000025

Scaffold Ga0209770_10000025


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000025 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91481
Total Scaffold Genes128 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (84.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F003690Metagenome / Metatranscriptome473Y
F004840Metagenome / Metatranscriptome421Y
F080044Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_10000025115F003690GGAMITDGLELYITTDYGIELDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK
Ga0209770_10000025121F004840N/AMYKLTCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMADEYSTVNLYTPTGKCYTKVFYRSGMVAVK
Ga0209770_1000002513F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLKEYNGIVLCPTTFSNVVEYKRIWIASGKRPMGNIRKHFSEYVQQIVEETIDKNQDGTL
Ga0209770_1000002515F000369AGGMSEIEPAQHFDRMNRVVEELLKGNTPTQIATITGFQRKEVLEFIDEWKTVVHSDSGIRDRAREAISGADQHYAMLIKEAWKTVEDADQAGQLAVKSGALKLIADIETKRIAMLQSVGVLENNEIASQIVETERKQEVLVKILKEVSSTCPKCKMDVAKRLSQITGIIESVPVEEADVV
Ga0209770_1000002529F080044AGAAGMPNLNEFFNKKIEQKEYELERLPGLRACNTCDEDVNGASWDPIELVMSWRCSKGHETVFKVQ
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Institute for Fundamental Biomedical Research
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