Scaffold Ga0209134_10000715

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10000715
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8781
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037203	Metagenome	168	Y
F042218	Metagenome	158	Y
F058795	Metagenome	134	Y
F078404	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_100007153	F078404	GGAG	MRQHYKPEPVARPWADLLLAVSIGLVMGVLLAVYL
Ga0209134_100007155	F058795	GAG	MIHPLFEAILRPYTPPTPTPEAIDAAMMADKLADGYFQRSIDRAIKLEQQNAYPEN
Ga0209134_100007156	F037203	AGG	MQNRFQTLSEALLSEGISHMWNWRPIAYGETVSLTYDDGTRYGHYVSVYRDEKGLYERPVHYRRG
Ga0209134_100007157	F042218	AGG	MLRSPSISALKTLFGENAPRAKALLRMNREQLLRTPIGKARAAECYNPPSTQDIRMECLNALGDFYGVESLDTKKGECLYLNAGDTYTPTLIRFGSSYRITTWGDIAERHCTI