Basic Information | |
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Family ID | F078404 |
Family Type | Metagenome |
Number of Sequences | 116 |
Average Sequence Length | 36 residues |
Representative Sequence | MRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL |
Number of Associated Samples | 66 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 91.38 % |
% of genes near scaffold ends (potentially truncated) | 9.48 % |
% of genes from short scaffolds (< 2000 bps) | 50.86 % |
Associated GOLD sequencing projects | 53 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (74.138 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (59.483 % of family members) |
Environment Ontology (ENVO) | Unclassified (80.172 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (89.655 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.92% β-sheet: 0.00% Coil/Unstructured: 65.08% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Freshwater Lake Freshwater Lentic Freshwater Anoxic Zone Freshwater Freshwater Lake Freshwater Sediment Freshwater Freshwater Aqueous Salt Marsh Deep Subsurface |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0049081_100277914 | 3300005581 | Freshwater Lentic | MREHYKPAPTPNPLADVLLAVSIGLALAAILLEYL* |
Ga0075465_100428744 | 3300006037 | Aqueous | MRQHYKPEPVARPWADVLLAVTIGLALAAILLEYL* |
Ga0070749_106921131 | 3300006802 | Aqueous | SMRQHYKPDLVARPWADALLAVTIGLVLAVLLVRYL* |
Ga0075464_102180736 | 3300006805 | Aqueous | MRQHYKPDPVARPWAGALLAVTIGLALAVILLEYL* |
Ga0070748_11640411 | 3300006920 | Aqueous | GGRSMNRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL* |
Ga0104986_175233 | 3300007734 | Freshwater | MRQHYKPEPVARPWADMLLAVSIGLILAAILLEYL* |
Ga0114973_1000311811 | 3300009068 | Freshwater Lake | MREHYKPTPTPHPLADVLLAVSIGLILAAILLEYL* |
Ga0114973_100090213 | 3300009068 | Freshwater Lake | MREHYKPEPTRNPLADALLAVSIGLILAAILLEYL* |
Ga0114973_100365803 | 3300009068 | Freshwater Lake | MRQHYKPEPGARPWAGALLAVTIGLALAVLLVRYL* |
Ga0114973_100400026 | 3300009068 | Freshwater Lake | MNRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP* |
Ga0114973_100766983 | 3300009068 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAVLLLEYL* |
Ga0114973_101011125 | 3300009068 | Freshwater Lake | MNRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL* |
Ga0114973_102714883 | 3300009068 | Freshwater Lake | MREHYKPEPVARPWAGALLAVTIGLTLAAILLEYL* |
Ga0114962_1000046151 | 3300009151 | Freshwater Lake | MREHYTPMPRPRPLAGAALAVAIGLALAVLLVRYL* |
Ga0114962_100025058 | 3300009151 | Freshwater Lake | MTRQHYKPAPPARPIASAALAVSIGLILAVLLVRYL* |
Ga0114962_100350452 | 3300009151 | Freshwater Lake | MREHYTPAPIARLWASAMLAVAIGLALAVLLLEYL* |
Ga0114962_103427173 | 3300009151 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL* |
Ga0114980_100030838 | 3300009152 | Freshwater Lake | MNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL* |
Ga0114980_100822263 | 3300009152 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL* |
Ga0114968_1000150824 | 3300009155 | Freshwater Lake | MRQHYKPAPIPRPWADALLAVSIGLILAAILLEYLA* |
Ga0114977_100382113 | 3300009158 | Freshwater Lake | MREHYTPAPIARPWADVLLAVTIGLALAVLLLEYL* |
Ga0114977_100586292 | 3300009158 | Freshwater Lake | MRKHYTPAPIARPWVDVLLAVTIGLALAVLLLEYL* |
Ga0114977_101032622 | 3300009158 | Freshwater Lake | MREHYKPEPVARPWAGALLAVTIGLVLAAILLEYL* |
Ga0114977_101529183 | 3300009158 | Freshwater Lake | MRQHYKPEPVARLWAGALLAVTIGLALAVILLEYL* |
Ga0114978_100388808 | 3300009159 | Freshwater Lake | MREHYKPEPIRNPLADALLAVSIGLILAAILLEYL* |
Ga0114978_100395263 | 3300009159 | Freshwater Lake | MRQHYKPVPVARPWAGALLAVTIGLALAVLLVRYL* |
Ga0114978_103115622 | 3300009159 | Freshwater Lake | MRQHYKPDPVARPWAGALLAVTIGLALAAILLEYL* |
Ga0114978_103773511 | 3300009159 | Freshwater Lake | MNRQHYKPEPVARLWAGALLAVLIGLILAVILLEYL* |
Ga0114978_103777091 | 3300009159 | Freshwater Lake | SMRQHYKPDPVARPWAGALLAVTIGLVLAVILLEYL* |
Ga0114981_106113932 | 3300009160 | Freshwater Lake | MRQHYKPDPVARPWAGALLAVLIGLILAVILLEYL* |
Ga0114966_100702595 | 3300009161 | Freshwater Lake | MRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL* |
Ga0114970_100062984 | 3300009163 | Freshwater Lake | MTRQHYTQAPPARPIAGAALAVAIGLALAVLLVGYL* |
Ga0114970_100162844 | 3300009163 | Freshwater Lake | MRQHYKPAPTPRPWADALLAVSIGLILAAILLEYLP* |
Ga0114970_100413623 | 3300009163 | Freshwater Lake | MREHYKPEPVARPWAGALLAVSIGLALAVLLVRYL* |
Ga0114970_100644114 | 3300009163 | Freshwater Lake | MREHYKPTPPPHPLADVLLAVSIGLILAAILLEYL* |
Ga0114970_101625212 | 3300009163 | Freshwater Lake | MNRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL* |
Ga0114975_100190598 | 3300009164 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL* |
Ga0114979_101981322 | 3300009180 | Freshwater Lake | MNRQHYKPEPVARPWAGALLAVIIGLALAVLLVRYL* |
Ga0114979_102788482 | 3300009180 | Freshwater Lake | MRQHYKPDPVARPWAGALLAVTIGLALAVLLVRYL* |
Ga0114969_100044686 | 3300009181 | Freshwater Lake | MTRQHYKPAPPARPIASAVLAVSIGLILAVLLVRYL* |
Ga0114969_107296303 | 3300009181 | Freshwater Lake | MRQHYKLEPVARPWAGALLAVTIGLALAVILLEYL* |
Ga0114974_100649751 | 3300009183 | Freshwater Lake | MRQPYPPAPAPRPWADALLAVSIGLILAVILLEYLA* |
Ga0114976_102664571 | 3300009184 | Freshwater Lake | TTLLNWKCKMREHYTIKPTPNPLADVLLAVSIGLVLAAILLEYLA* |
Ga0114982_10436251 | 3300009419 | Deep Subsurface | RQHYKPDPVARPWAGALLAVTIGLALAAILLEYL* |
Ga0114964_104760461 | 3300010157 | Freshwater Lake | MTRQHYTQAPPARPIAGAALAVAIGLALAVLLVRYL* |
Ga0114967_101257311 | 3300010160 | Freshwater Lake | TMRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL* |
Ga0133913_107874192 | 3300010885 | Freshwater Lake | MREHYTPAPVARPIASAALAVAIGLTLTVLLAGYL* |
Ga0133913_108500405 | 3300010885 | Freshwater Lake | MREHYKPEPVARPWAGALLAVSIGLVLAVLLVRYL* |
Ga0133913_108984113 | 3300010885 | Freshwater Lake | MREHYTIKPTPNPLADVLLAVSIGLVLAAILLEYLA* |
Ga0133913_118773614 | 3300010885 | Freshwater Lake | MRQHYTPAPAPRPWADALLAVSIGLILAVILLEYLA* |
Ga0133913_130966392 | 3300010885 | Freshwater Lake | MNRQHYKPEPVARPWADLLLAVSIGLILAAILLEYL* |
Ga0139557_10012444 | 3300011010 | Freshwater | MNREHYKLEPVARPWAGALLAVTIGLTLAVILLEYL* |
Ga0151516_1024620 | 3300011116 | Freshwater | MRQHYKPEPAPRPWADALLAISIGLILAFILLEYLP* |
Ga0153698_116148 | 3300011335 | Freshwater | MRQHYKPEPVARPWADLLLAVSIGLILAAILLEYL* |
Ga0153700_1029111 | 3300011339 | Freshwater | MTRQHYTPDPAPRDAAGIALAVAIGLALAVLLVRYL* |
Ga0164295_105770904 | 3300013014 | Freshwater | MREHYKPEPVARPWAGALLAVTIGLALAVILLEYL* |
Ga0177922_108820864 | 3300013372 | Freshwater | MNREHYKLEPVARPWAGALLAVTIGLTLPVILLEYL* |
Ga0181338_10150544 | 3300015050 | Freshwater Lake | MRQHYTPDPVARPWAGALLAVTIGVALAVILLEYL* |
Ga0181365_10797413 | 3300017736 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVSIGLALAVLLVRYL |
Ga0181356_10944153 | 3300017761 | Freshwater Lake | MNRQHYKPEPVARPWAGAMLAVTIGLALAVLLVRYL |
Ga0181346_10115672 | 3300017780 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVIIGLALAAILLEYL |
Ga0181346_12191402 | 3300017780 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVIIGLALAVILLEYL |
Ga0181355_11894252 | 3300017785 | Freshwater Lake | MREHYKPEPVARPWAGALLAVIIGLALAVILLEYL |
Ga0181355_12479414 | 3300017785 | Freshwater Lake | MNRQHYKPEPVARPWASAMLAVTIGLALAAILLEYL |
Ga0181355_13126701 | 3300017785 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTICLALAVILLEYL |
Ga0181553_107060742 | 3300018416 | Salt Marsh | MRQHYNPAPIARPWAGALLAVSIGLILAAILLEYL |
Ga0181359_10041306 | 3300019784 | Freshwater Lake | MNRQHYKPEPAPRPWAGALLAILIGLALAFILLEYL |
Ga0181359_10509183 | 3300019784 | Freshwater Lake | MRQHYKPDPVARPWAGALLAVTIGLALAAILLEYL |
Ga0181359_10997853 | 3300019784 | Freshwater Lake | MRQHYTPDPVARPWAGALLAVTIGVALAVILLEYL |
Ga0181359_11341121 | 3300019784 | Freshwater Lake | MRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP |
Ga0181359_11346151 | 3300019784 | Freshwater Lake | RRRFYGGRSMRQHYKPDPVARPWAGALLAVTIGLALAVLLVRYL |
Ga0194049_11327752 | 3300020157 | Anoxic Zone Freshwater | MRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL |
Ga0194041_100614412 | 3300021340 | Anoxic Zone Freshwater | MRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL |
Ga0194059_11019603 | 3300021600 | Anoxic Zone Freshwater | MRQHYKPEPVARPWAGAMLAVTIGLALAAILLEYL |
Ga0181354_10115081 | 3300022190 | Freshwater Lake | MNRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL |
Ga0214917_1000456617 | 3300022752 | Freshwater | MREHYTIKPTRNPLADALLAVSIGLILAVILLEYL |
Ga0214923_105690801 | 3300023179 | Freshwater | MRQHYKPEPAPRPWAGALLAVTIGLALAVILLEYL |
Ga0214919_1000140617 | 3300023184 | Freshwater | MRQHYKPEPVARPWADLLLAVSIGLILAVILLEYL |
Ga0214919_100492153 | 3300023184 | Freshwater | MREHYKPAPVARPWAGALLAVTIGLALAAILLEYL |
Ga0208248_10729953 | 3300025595 | Freshwater | MREHYKPAPPARPIASAALAVSIGLALAVILLEYL |
Ga0208613_10591442 | 3300025616 | Freshwater | MREHYKPEPVARPWADALLAVSIGLALAVILLEYL |
Ga0208916_100007423 | 3300025896 | Aqueous | MRQHYKPEPVARPWADVLLAVTIGLALAAILLEYL |
Ga0208975_10694492 | 3300027659 | Freshwater Lentic | MREHYKPAPTPNPLADVLLAVSIGLALAAILLEYL |
Ga0209297_100099620 | 3300027733 | Freshwater Lake | MNRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP |
Ga0209297_10471323 | 3300027733 | Freshwater Lake | MREHYTPAPIARPWADVLLAVTIGLALAVLLLEYL |
Ga0209297_10648773 | 3300027733 | Freshwater Lake | MRQHYKPEPVARLWAGALLAVTIGLALAVILLEYL |
Ga0209087_100821810 | 3300027734 | Freshwater Lake | MRKHYTPAPIARPWVDVLLAVTIGLALAVLLLEYL |
Ga0209087_10100788 | 3300027734 | Freshwater Lake | MREHYKPEPVARPWAGALLAVTIGLVLAAILLEYL |
Ga0209087_10130998 | 3300027734 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL |
Ga0209190_10029496 | 3300027736 | Freshwater Lake | MREHYKPTPTPHPLADVLLAVSIGLILAAILLEYL |
Ga0209190_10040094 | 3300027736 | Freshwater Lake | MTRQHYTQAPPARPIAGAALAVAIGLALAVLLVGYL |
Ga0209190_10042737 | 3300027736 | Freshwater Lake | MREHYKPEPTRNPLADALLAVSIGLILAAILLEYL |
Ga0209190_10287725 | 3300027736 | Freshwater Lake | MRQHYKPEPVARPWAGALLAVTIGLALAVLLLEYL |
Ga0209190_10303803 | 3300027736 | Freshwater Lake | MREHYKPEPVARPWAGALLAVSIGLALAVLLVRYL |
Ga0209084_100052413 | 3300027749 | Freshwater Lake | MREHYTPMPRPRPLAGAALAVAIGLALAVLLVRYL |
Ga0209084_100123725 | 3300027749 | Freshwater Lake | MTRQHYKPAPPARPIASAALAVSIGLILAVLLVRYL |
Ga0209084_10084663 | 3300027749 | Freshwater Lake | MREHYTPAPIARLWASAMLAVAIGLALAVLLLEYL |
Ga0209596_100147024 | 3300027754 | Freshwater Lake | MRQHYKPAPIPRPWADALLAVSIGLILAAILLEYLA |
Ga0209596_10065545 | 3300027754 | Freshwater Lake | MTRQHYKPAPPARPIASAVLAVSIGLILAVLLVRYL |
Ga0209296_10112094 | 3300027759 | Freshwater Lake | MREHYKIKPAINPLADVLLAVSIGLILAAILLEYL |
Ga0209088_1000026457 | 3300027763 | Freshwater Lake | MNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL |
Ga0209088_100328412 | 3300027763 | Freshwater Lake | MNRQHYKPEPVARPWAGALLAVIIGLALAVLLVRYL |
Ga0209134_100007153 | 3300027764 | Freshwater Lake | MRQHYKPEPVARPWADLLLAVSIGLVMGVLLAVYL |
Ga0209134_100325403 | 3300027764 | Freshwater Lake | MNREHYKPEPVARPWAGALLAVTIGLALAVILLEYL |
Ga0209086_100368755 | 3300027770 | Freshwater Lake | MRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL |
Ga0209500_102128921 | 3300027782 | Freshwater Lake | SMRQHYKPDPVARPWAGALLAVTIGLVLAVILLEYL |
Ga0209500_102325233 | 3300027782 | Freshwater Lake | MNRQHYKPEPVARLWAGALLAVLIGLILAVILLEYL |
Ga0209500_102676521 | 3300027782 | Freshwater Lake | MNRQHYKPEPVARLWAGALLAVTIGLTLAVILLEYL |
Ga0209354_102610943 | 3300027808 | Freshwater Lake | MREHYKSEPVARPWAGALLAVTIGLALAAILLEYL |
Ga0209191_12161632 | 3300027969 | Freshwater Lake | MRQHYKPEPVARPWAGAMLAVTIGLALAVILLEYL |
Ga0209401_10010358 | 3300027971 | Freshwater Lake | MRQHYKPEPGARPWAGALLAVTIGLALAVLLVRYL |
Ga0315294_102166372 | 3300031952 | Sediment | MREHYKPAPVARPWAGALLAVSIGLALAVLLVRYL |
Ga0315274_113640943 | 3300031999 | Sediment | MNRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL |
Ga0315272_103819293 | 3300032018 | Sediment | MREHYTIKPTPNPLAGALLAVSIGLILAVLLVRYL |
Ga0315268_102783306 | 3300032173 | Sediment | MRQHYKPAPVARPWAGALLAVSIGLVLAVLLVGYL |
Ga0335058_0216450_954_1061 | 3300034121 | Freshwater | MRQHYKPEPVARPWAGVLLAVTIGLALAVILLEYL |
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