NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F078404

Metagenome Family F078404

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078404
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 36 residues
Representative Sequence MRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL
Number of Associated Samples 66
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 91.38 %
% of genes near scaffold ends (potentially truncated) 9.48 %
% of genes from short scaffolds (< 2000 bps) 50.86 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.138 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(59.483 % of family members)
Environment Ontology (ENVO) Unclassified
(80.172 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(89.655 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46
1Ga0049081_100277914
2Ga0075465_100428744
3Ga0070749_106921131
4Ga0075464_102180736
5Ga0070748_11640411
6Ga0104986_175233
7Ga0114973_1000311811
8Ga0114973_100090213
9Ga0114973_100365803
10Ga0114973_100400026
11Ga0114973_100766983
12Ga0114973_101011125
13Ga0114973_102714883
14Ga0114962_1000046151
15Ga0114962_100025058
16Ga0114962_100350452
17Ga0114962_103427173
18Ga0114980_100030838
19Ga0114980_100822263
20Ga0114968_1000150824
21Ga0114977_100382113
22Ga0114977_100586292
23Ga0114977_101032622
24Ga0114977_101529183
25Ga0114978_100388808
26Ga0114978_100395263
27Ga0114978_103115622
28Ga0114978_103773511
29Ga0114978_103777091
30Ga0114981_106113932
31Ga0114966_100702595
32Ga0114970_100062984
33Ga0114970_100162844
34Ga0114970_100413623
35Ga0114970_100644114
36Ga0114970_101625212
37Ga0114975_100190598
38Ga0114979_101981322
39Ga0114979_102788482
40Ga0114969_100044686
41Ga0114969_107296303
42Ga0114974_100649751
43Ga0114976_102664571
44Ga0114982_10436251
45Ga0114964_104760461
46Ga0114967_101257311
47Ga0133913_107874192
48Ga0133913_108500405
49Ga0133913_108984113
50Ga0133913_118773614
51Ga0133913_130966392
52Ga0139557_10012444
53Ga0151516_1024620
54Ga0153698_116148
55Ga0153700_1029111
56Ga0164295_105770904
57Ga0177922_108820864
58Ga0181338_10150544
59Ga0181365_10797413
60Ga0181356_10944153
61Ga0181346_10115672
62Ga0181346_12191402
63Ga0181355_11894252
64Ga0181355_12479414
65Ga0181355_13126701
66Ga0181553_107060742
67Ga0181359_10041306
68Ga0181359_10509183
69Ga0181359_10997853
70Ga0181359_11341121
71Ga0181359_11346151
72Ga0194049_11327752
73Ga0194041_100614412
74Ga0194059_11019603
75Ga0181354_10115081
76Ga0214917_1000456617
77Ga0214923_105690801
78Ga0214919_1000140617
79Ga0214919_100492153
80Ga0208248_10729953
81Ga0208613_10591442
82Ga0208916_100007423
83Ga0208975_10694492
84Ga0209297_100099620
85Ga0209297_10471323
86Ga0209297_10648773
87Ga0209087_100821810
88Ga0209087_10100788
89Ga0209087_10130998
90Ga0209190_10029496
91Ga0209190_10040094
92Ga0209190_10042737
93Ga0209190_10287725
94Ga0209190_10303803
95Ga0209084_100052413
96Ga0209084_100123725
97Ga0209084_10084663
98Ga0209596_100147024
99Ga0209596_10065545
100Ga0209296_10112094
101Ga0209088_1000026457
102Ga0209088_100328412
103Ga0209134_100007153
104Ga0209134_100325403
105Ga0209086_100368755
106Ga0209500_102128921
107Ga0209500_102325233
108Ga0209500_102676521
109Ga0209354_102610943
110Ga0209191_12161632
111Ga0209401_10010358
112Ga0315294_102166372
113Ga0315274_113640943
114Ga0315272_103819293
115Ga0315268_102783306
116Ga0335058_0216450_954_1061
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 34.92%    β-sheet: 0.00%    Coil/Unstructured: 65.08%
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5101520253035MRQHYKPEPVARPWAGALLAVTIGLALAVILLEYLCytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
25.9%74.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater
Anoxic Zone Freshwater
Freshwater Lake
Freshwater
Sediment
Freshwater
Freshwater
Aqueous
Salt Marsh
Deep Subsurface
14.7%5.2%59.5%3.4%4.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0049081_1002779143300005581Freshwater LenticMREHYKPAPTPNPLADVLLAVSIGLALAAILLEYL*
Ga0075465_1004287443300006037AqueousMRQHYKPEPVARPWADVLLAVTIGLALAAILLEYL*
Ga0070749_1069211313300006802AqueousSMRQHYKPDLVARPWADALLAVTIGLVLAVLLVRYL*
Ga0075464_1021807363300006805AqueousMRQHYKPDPVARPWAGALLAVTIGLALAVILLEYL*
Ga0070748_116404113300006920AqueousGGRSMNRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL*
Ga0104986_1752333300007734FreshwaterMRQHYKPEPVARPWADMLLAVSIGLILAAILLEYL*
Ga0114973_10003118113300009068Freshwater LakeMREHYKPTPTPHPLADVLLAVSIGLILAAILLEYL*
Ga0114973_1000902133300009068Freshwater LakeMREHYKPEPTRNPLADALLAVSIGLILAAILLEYL*
Ga0114973_1003658033300009068Freshwater LakeMRQHYKPEPGARPWAGALLAVTIGLALAVLLVRYL*
Ga0114973_1004000263300009068Freshwater LakeMNRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP*
Ga0114973_1007669833300009068Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAVLLLEYL*
Ga0114973_1010111253300009068Freshwater LakeMNRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL*
Ga0114973_1027148833300009068Freshwater LakeMREHYKPEPVARPWAGALLAVTIGLTLAAILLEYL*
Ga0114962_10000461513300009151Freshwater LakeMREHYTPMPRPRPLAGAALAVAIGLALAVLLVRYL*
Ga0114962_1000250583300009151Freshwater LakeMTRQHYKPAPPARPIASAALAVSIGLILAVLLVRYL*
Ga0114962_1003504523300009151Freshwater LakeMREHYTPAPIARLWASAMLAVAIGLALAVLLLEYL*
Ga0114962_1034271733300009151Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL*
Ga0114980_1000308383300009152Freshwater LakeMNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL*
Ga0114980_1008222633300009152Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL*
Ga0114968_10001508243300009155Freshwater LakeMRQHYKPAPIPRPWADALLAVSIGLILAAILLEYLA*
Ga0114977_1003821133300009158Freshwater LakeMREHYTPAPIARPWADVLLAVTIGLALAVLLLEYL*
Ga0114977_1005862923300009158Freshwater LakeMRKHYTPAPIARPWVDVLLAVTIGLALAVLLLEYL*
Ga0114977_1010326223300009158Freshwater LakeMREHYKPEPVARPWAGALLAVTIGLVLAAILLEYL*
Ga0114977_1015291833300009158Freshwater LakeMRQHYKPEPVARLWAGALLAVTIGLALAVILLEYL*
Ga0114978_1003888083300009159Freshwater LakeMREHYKPEPIRNPLADALLAVSIGLILAAILLEYL*
Ga0114978_1003952633300009159Freshwater LakeMRQHYKPVPVARPWAGALLAVTIGLALAVLLVRYL*
Ga0114978_1031156223300009159Freshwater LakeMRQHYKPDPVARPWAGALLAVTIGLALAAILLEYL*
Ga0114978_1037735113300009159Freshwater LakeMNRQHYKPEPVARLWAGALLAVLIGLILAVILLEYL*
Ga0114978_1037770913300009159Freshwater LakeSMRQHYKPDPVARPWAGALLAVTIGLVLAVILLEYL*
Ga0114981_1061139323300009160Freshwater LakeMRQHYKPDPVARPWAGALLAVLIGLILAVILLEYL*
Ga0114966_1007025953300009161Freshwater LakeMRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL*
Ga0114970_1000629843300009163Freshwater LakeMTRQHYTQAPPARPIAGAALAVAIGLALAVLLVGYL*
Ga0114970_1001628443300009163Freshwater LakeMRQHYKPAPTPRPWADALLAVSIGLILAAILLEYLP*
Ga0114970_1004136233300009163Freshwater LakeMREHYKPEPVARPWAGALLAVSIGLALAVLLVRYL*
Ga0114970_1006441143300009163Freshwater LakeMREHYKPTPPPHPLADVLLAVSIGLILAAILLEYL*
Ga0114970_1016252123300009163Freshwater LakeMNRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL*
Ga0114975_1001905983300009164Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL*
Ga0114979_1019813223300009180Freshwater LakeMNRQHYKPEPVARPWAGALLAVIIGLALAVLLVRYL*
Ga0114979_1027884823300009180Freshwater LakeMRQHYKPDPVARPWAGALLAVTIGLALAVLLVRYL*
Ga0114969_1000446863300009181Freshwater LakeMTRQHYKPAPPARPIASAVLAVSIGLILAVLLVRYL*
Ga0114969_1072963033300009181Freshwater LakeMRQHYKLEPVARPWAGALLAVTIGLALAVILLEYL*
Ga0114974_1006497513300009183Freshwater LakeMRQPYPPAPAPRPWADALLAVSIGLILAVILLEYLA*
Ga0114976_1026645713300009184Freshwater LakeTTLLNWKCKMREHYTIKPTPNPLADVLLAVSIGLVLAAILLEYLA*
Ga0114982_104362513300009419Deep SubsurfaceRQHYKPDPVARPWAGALLAVTIGLALAAILLEYL*
Ga0114964_1047604613300010157Freshwater LakeMTRQHYTQAPPARPIAGAALAVAIGLALAVLLVRYL*
Ga0114967_1012573113300010160Freshwater LakeTMRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL*
Ga0133913_1078741923300010885Freshwater LakeMREHYTPAPVARPIASAALAVAIGLTLTVLLAGYL*
Ga0133913_1085004053300010885Freshwater LakeMREHYKPEPVARPWAGALLAVSIGLVLAVLLVRYL*
Ga0133913_1089841133300010885Freshwater LakeMREHYTIKPTPNPLADVLLAVSIGLVLAAILLEYLA*
Ga0133913_1187736143300010885Freshwater LakeMRQHYTPAPAPRPWADALLAVSIGLILAVILLEYLA*
Ga0133913_1309663923300010885Freshwater LakeMNRQHYKPEPVARPWADLLLAVSIGLILAAILLEYL*
Ga0139557_100124443300011010FreshwaterMNREHYKLEPVARPWAGALLAVTIGLTLAVILLEYL*
Ga0151516_10246203300011116FreshwaterMRQHYKPEPAPRPWADALLAISIGLILAFILLEYLP*
Ga0153698_1161483300011335FreshwaterMRQHYKPEPVARPWADLLLAVSIGLILAAILLEYL*
Ga0153700_10291113300011339FreshwaterMTRQHYTPDPAPRDAAGIALAVAIGLALAVLLVRYL*
Ga0164295_1057709043300013014FreshwaterMREHYKPEPVARPWAGALLAVTIGLALAVILLEYL*
Ga0177922_1088208643300013372FreshwaterMNREHYKLEPVARPWAGALLAVTIGLTLPVILLEYL*
Ga0181338_101505443300015050Freshwater LakeMRQHYTPDPVARPWAGALLAVTIGVALAVILLEYL*
Ga0181365_107974133300017736Freshwater LakeMRQHYKPEPVARPWAGALLAVSIGLALAVLLVRYL
Ga0181356_109441533300017761Freshwater LakeMNRQHYKPEPVARPWAGAMLAVTIGLALAVLLVRYL
Ga0181346_101156723300017780Freshwater LakeMRQHYKPEPVARPWAGALLAVIIGLALAAILLEYL
Ga0181346_121914023300017780Freshwater LakeMRQHYKPEPVARPWAGALLAVIIGLALAVILLEYL
Ga0181355_118942523300017785Freshwater LakeMREHYKPEPVARPWAGALLAVIIGLALAVILLEYL
Ga0181355_124794143300017785Freshwater LakeMNRQHYKPEPVARPWASAMLAVTIGLALAAILLEYL
Ga0181355_131267013300017785Freshwater LakeMRQHYKPEPVARPWAGALLAVTICLALAVILLEYL
Ga0181553_1070607423300018416Salt MarshMRQHYNPAPIARPWAGALLAVSIGLILAAILLEYL
Ga0181359_100413063300019784Freshwater LakeMNRQHYKPEPAPRPWAGALLAILIGLALAFILLEYL
Ga0181359_105091833300019784Freshwater LakeMRQHYKPDPVARPWAGALLAVTIGLALAAILLEYL
Ga0181359_109978533300019784Freshwater LakeMRQHYTPDPVARPWAGALLAVTIGVALAVILLEYL
Ga0181359_113411213300019784Freshwater LakeMRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP
Ga0181359_113461513300019784Freshwater LakeRRRFYGGRSMRQHYKPDPVARPWAGALLAVTIGLALAVLLVRYL
Ga0194049_113277523300020157Anoxic Zone FreshwaterMRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL
Ga0194041_1006144123300021340Anoxic Zone FreshwaterMRQHYKPEPVARPWAGALLAVTIGLALAAILLEYL
Ga0194059_110196033300021600Anoxic Zone FreshwaterMRQHYKPEPVARPWAGAMLAVTIGLALAAILLEYL
Ga0181354_101150813300022190Freshwater LakeMNRQHYKPEPVARPWAGALLAVTIGLALAVILLEYL
Ga0214917_10004566173300022752FreshwaterMREHYTIKPTRNPLADALLAVSIGLILAVILLEYL
Ga0214923_1056908013300023179FreshwaterMRQHYKPEPAPRPWAGALLAVTIGLALAVILLEYL
Ga0214919_10001406173300023184FreshwaterMRQHYKPEPVARPWADLLLAVSIGLILAVILLEYL
Ga0214919_1004921533300023184FreshwaterMREHYKPAPVARPWAGALLAVTIGLALAAILLEYL
Ga0208248_107299533300025595FreshwaterMREHYKPAPPARPIASAALAVSIGLALAVILLEYL
Ga0208613_105914423300025616FreshwaterMREHYKPEPVARPWADALLAVSIGLALAVILLEYL
Ga0208916_1000074233300025896AqueousMRQHYKPEPVARPWADVLLAVTIGLALAAILLEYL
Ga0208975_106944923300027659Freshwater LenticMREHYKPAPTPNPLADVLLAVSIGLALAAILLEYL
Ga0209297_1000996203300027733Freshwater LakeMNRQHYKPEPAPRPWADALLAISIGLALAFILLEYLP
Ga0209297_104713233300027733Freshwater LakeMREHYTPAPIARPWADVLLAVTIGLALAVLLLEYL
Ga0209297_106487733300027733Freshwater LakeMRQHYKPEPVARLWAGALLAVTIGLALAVILLEYL
Ga0209087_1008218103300027734Freshwater LakeMRKHYTPAPIARPWVDVLLAVTIGLALAVLLLEYL
Ga0209087_101007883300027734Freshwater LakeMREHYKPEPVARPWAGALLAVTIGLVLAAILLEYL
Ga0209087_101309983300027734Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL
Ga0209190_100294963300027736Freshwater LakeMREHYKPTPTPHPLADVLLAVSIGLILAAILLEYL
Ga0209190_100400943300027736Freshwater LakeMTRQHYTQAPPARPIAGAALAVAIGLALAVLLVGYL
Ga0209190_100427373300027736Freshwater LakeMREHYKPEPTRNPLADALLAVSIGLILAAILLEYL
Ga0209190_102877253300027736Freshwater LakeMRQHYKPEPVARPWAGALLAVTIGLALAVLLLEYL
Ga0209190_103038033300027736Freshwater LakeMREHYKPEPVARPWAGALLAVSIGLALAVLLVRYL
Ga0209084_1000524133300027749Freshwater LakeMREHYTPMPRPRPLAGAALAVAIGLALAVLLVRYL
Ga0209084_1001237253300027749Freshwater LakeMTRQHYKPAPPARPIASAALAVSIGLILAVLLVRYL
Ga0209084_100846633300027749Freshwater LakeMREHYTPAPIARLWASAMLAVAIGLALAVLLLEYL
Ga0209596_1001470243300027754Freshwater LakeMRQHYKPAPIPRPWADALLAVSIGLILAAILLEYLA
Ga0209596_100655453300027754Freshwater LakeMTRQHYKPAPPARPIASAVLAVSIGLILAVLLVRYL
Ga0209296_101120943300027759Freshwater LakeMREHYKIKPAINPLADVLLAVSIGLILAAILLEYL
Ga0209088_10000264573300027763Freshwater LakeMNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL
Ga0209088_1003284123300027763Freshwater LakeMNRQHYKPEPVARPWAGALLAVIIGLALAVLLVRYL
Ga0209134_1000071533300027764Freshwater LakeMRQHYKPEPVARPWADLLLAVSIGLVMGVLLAVYL
Ga0209134_1003254033300027764Freshwater LakeMNREHYKPEPVARPWAGALLAVTIGLALAVILLEYL
Ga0209086_1003687553300027770Freshwater LakeMRQHYTPTRPVRPLAGAALAVAIGLALAVLLVRYL
Ga0209500_1021289213300027782Freshwater LakeSMRQHYKPDPVARPWAGALLAVTIGLVLAVILLEYL
Ga0209500_1023252333300027782Freshwater LakeMNRQHYKPEPVARLWAGALLAVLIGLILAVILLEYL
Ga0209500_1026765213300027782Freshwater LakeMNRQHYKPEPVARLWAGALLAVTIGLTLAVILLEYL
Ga0209354_1026109433300027808Freshwater LakeMREHYKSEPVARPWAGALLAVTIGLALAAILLEYL
Ga0209191_121616323300027969Freshwater LakeMRQHYKPEPVARPWAGAMLAVTIGLALAVILLEYL
Ga0209401_100103583300027971Freshwater LakeMRQHYKPEPGARPWAGALLAVTIGLALAVLLVRYL
Ga0315294_1021663723300031952SedimentMREHYKPAPVARPWAGALLAVSIGLALAVLLVRYL
Ga0315274_1136409433300031999SedimentMNRQHYKPEPVARPWAGALLAVTIGLALAVLLVRYL
Ga0315272_1038192933300032018SedimentMREHYTIKPTPNPLAGALLAVSIGLILAVLLVRYL
Ga0315268_1027833063300032173SedimentMRQHYKPAPVARPWAGALLAVSIGLVLAVLLVGYL
Ga0335058_0216450_954_10613300034121FreshwaterMRQHYKPEPVARPWAGVLLAVTIGLALAVILLEYL


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