Scaffold Ga0209088_10054789

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10054789
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1925
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007747	Metagenome / Metatranscriptome	345	Y
F020510	Metagenome / Metatranscriptome	223	Y
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100547891	F020510	N/A	WKGVRRNKMTLAQVLLMFSARVIGTYTPEQYANCVREARANRMRWGMGQW
Ga0209088_100547894	F081048	N/A	MSVKRLTWQIEILERAKKSLIDGRLVMARSRLDMALHIAKELLKRAQTYQKRDLEKKK
Ga0209088_100547896	F007747	AGGAG	MKHLGEIKFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDEEAVIEYVIVKALKAFAKK