Scaffold Ga0209088_10002527

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10002527
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11177
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000252710	F026867	GAG	MSLGRLNDIAMKLRQENRALSLRQLGAAYGLGYTRIKQMQALPGFPQIAGKVIPSDFDQWRLIRTTGLSSQHRGDRLRSAADTTRALKSTSDSRVSWQRIENSLKASIESRGLPEGNENSDA
Ga0209088_1000252712	F042872	N/A	MSFPIIINQIKEGNRSVGSNPTPSEAYGYNDLCRNGNTAVITEPKKKHYQQHSFLIRGGYPAEPAYHPNPAVARMWSAQR
Ga0209088_1000252720	F016963	GGAGG	VIEILAEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIERMRPGL
Ga0209088_1000252726	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVRK