Scaffold Ga0209088_10002338

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10002338
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11716
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017467	Metagenome	240	Y
F040482	Metagenome / Metatranscriptome	161	N
F041563	Metagenome	159	Y
F053781	Metagenome	140	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000233813	F065407	GGAG	MFTFDEQYKKFEELNERTKEAYKFWFNVITSSWEDFFKPKKK
Ga0209088_1000233816	F053781	N/A	MSKLKLTEEFLILKLFCKMYEDAMHRKDYTQMLELSVDIAESAEKLEQMTVDHINGH
Ga0209088_1000233819	F017467	AGAAG	LKNNSDDYLAWWYIGVAKKRGWPEVVRLLAQYPEKENRIKQLIKKKLGK
Ga0209088_1000233823	F041563	N/A	MKIQIKILKENKDGSANAEVNFDKEGLEVLVQWGMVSLLTKAIDEYKIEPDEAEASVQPKKKKVKK
Ga0209088_1000233824	F040482	N/A	MTWNLRLVNMCSPYEDYFEIREVFYDTMGKPIGHTKAAIGGEDRLEVDRYIELAKLALDKPILKFANNEDTNKDS