Scaffold Ga0209088_10000264

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000264
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37988
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (87.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F008750	Metagenome / Metatranscriptome	328	Y
F058795	Metagenome	134	Y
F078404	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000026414	F008750	AGGA	MKFFNLLREPFKKPTPLQVIAEALADAHLSKLEAEAGVEYAESIVAYNIARIERLNKRMEEYK
Ga0209088_1000026423	F000961	AGG	MNAPEIDPVKYGVLWQKVQDYERRFDEMSAKIDKLETNIDKLVELANQGKGSFYAGMVMVSAVGSVIGYLSNWVGKS
Ga0209088_1000026455	F058795	GAG	MIHPLFEAILRPYAPPTPEAIDAAMMADKMADGYNQRKIENAIKLEQQNANPEN
Ga0209088_1000026457	F078404	GGAGG	MNRQHYKPEPAPRPWANALLAISIGLALAFILLEYL