Scaffold Ga0209088_10000223

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000223
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41835
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (60.24%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F003965	Metagenome / Metatranscriptome	459	Y
F006385	Metagenome / Metatranscriptome	374	Y
F015600	Metagenome / Metatranscriptome	253	Y
F023106	Metagenome / Metatranscriptome	211	Y
F027847	Metagenome / Metatranscriptome	193	Y
F062758	Metagenome	130	Y
F068817	Metagenome	124	Y
F071231	Metagenome / Metatranscriptome	122	N
F080046	Metagenome / Metatranscriptome	115	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000022317	F062758	AGG	VADILLSNEDLTVFGGPESISLDLDIGPQGDRGSIIIGTLGDPRDATVRSYIVQDVQALDIAVDANPNSPTFKTLFQYVVQGSGSLQWTPVVSLKTEFYSSIKTVTATNGKLVIPPINVTDIYLFQENSTIGSSNFNIQYSISSTESSGPLSTNLVIKELNTGSGFLALPLEINGVEYINNEWVPMTGTKSVHLFITVV
Ga0209088_1000022327	F093845	GGGGG	MIATLTSISGATKQMNFNNREHLLEFIELYKATLHIGQAVCIDAPLVGIHNGWIQGTAPK
Ga0209088_1000022328	F027847	AGG	MNPFTYMIDWLDENADVGAPIGAFIGVAIAIGLCFIFGGN
Ga0209088_1000022329	F003965	AGGTGG	MTTLTKCLEHNPMKSAISEYADTQFTFCQDCEQNIERWYNDTDPERLPMWTDWKVSK
Ga0209088_1000022331	F080046	AGGAG	MSISLANKIAKDKFFQPPSKYINHKVVEIVSLNEDSGIATVILEKYTISGNANVYKNNNVFTVELPYSEFQNLNGWSK
Ga0209088_1000022336	F071231	AGGTGG	MMTRKDYVKVAEILSNYFATSVFDEQGEILFADLVDEFSLMFESDNERFDPSRFAIACYKELEMSK
Ga0209088_1000022337	F006385	GGAG	MILDNGTLIAIVIALAGSLLMMIAFWQRNVKLEKEIRRLQITLRTERLKK
Ga0209088_1000022338	F002598	GAGG	MATKLYTIESLLVGKNYRSRTRHFEGEIVSAQKREGIWYGENTEAYLIEVNTKGLRNKFATIAVKVGE
Ga0209088_1000022340	F000447	GAGG	MGYIEIFRIDNEGAGWIDLSQANSDELFNLEVGLLNEGALFTTKEND
Ga0209088_1000022359	F015600	AGGA	MDTTQLDPRLQLAVSMGVSGTDILHGELKNLMLEAETEYLEIEKEEREGGYSDAMLSMDRTRAEGRLDAFVEVYNLTYALSFAISDRIKSRG
Ga0209088_1000022363	F023106	GGA	MRISRRITDEEKVANKLGNTISDLRVDLELVGEYIAKSQPYVVYNRLQVIAESAKETKEGTNYAHNNF
Ga0209088_1000022368	F068817	GAG	VDIDEFMKDPWKRFNEMRNTPHECDYDYRIDSSGTMFFEICRLCLDTKGVIEMND