Scaffold Ga0209088_10000031

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000031
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111921
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (76.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F003965	Metagenome / Metatranscriptome	459	Y
F007263	Metagenome / Metatranscriptome	354	Y
F007691	Metagenome / Metatranscriptome	346	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y
F043941	Metagenome	155	Y
F044495	Metagenome / Metatranscriptome	154	Y
F080127	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_10000031108	F080127	GGA	MNSNYPPMVESTSRSPQPHRFFERFLGNDLNKLSADLQDRYTKIQNAEIIGVTPVGENEIWKQSNSVSTMKWRQYNVFQFHSKELYSLYKAIGDMTKEACDYYGVDFNANQYMLQGWFNITNKGKGKLDWHDHGPEGAPNFHGYYCVKAAPSTTHYRVFNKNVENVNIDNRAILSEMGHPHAMADWDWEGPRITVAYDVIPLRDLITHGMGQEQHWIPLS
Ga0209088_10000031137	F003965	AGGTGG	MTTLEKMTVCVEHNPMKSAISEVMDTQYTFCQDCENNIERWYNDTDPERLPMWTDWKVSK
Ga0209088_10000031148	F007263	AGAAGG	MTAETIDQNEFYFIKDEMRFCCDESQFKYVCKAHGEAMGCYYHEFDYTEDCEEQH
Ga0209088_10000031165	F022197	AGGA	MTTETIEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIQENVFLPELGEWHTK
Ga0209088_10000031166	F007691	GAG	VNTIDDLINEIYESNYSHLEFEENMGGDACDCHIHTTLNTIAHYAGIEVG
Ga0209088_10000031169	F020910	GAGG	MWSKYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEAYAPIITDVSKVTP
Ga0209088_1000003166	F044495	AGGA	MKRIEKTLIALAVAGAVGFSFAFALLKGIPETFDWELDEEENYE
Ga0209088_1000003167	F000264	N/A	MTAKLYTSELWLKKRYHMDKKTPEDIAKECGVSVETIYVYLAKFGLRKSKR
Ga0209088_1000003176	F043941	AGG	VPNYTIYQGKFVCHTCKIEVKTLRLYAETKEMTWMCKDKHLSTVKFGKQKWKGNDREE