NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000029

Scaffold Ga0209088_10000029


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114777
Total Scaffold Genes190 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)149 (78.42%)
Novel Protein Genes23 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Associated Families23

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001125Metagenome / Metatranscriptome769Y
F001562Metagenome / Metatranscriptome670Y
F003422Metagenome / Metatranscriptome487Y
F007263Metagenome / Metatranscriptome354Y
F008814Metagenome / Metatranscriptome327Y
F011299Metagenome / Metatranscriptome292Y
F017133Metagenome / Metatranscriptome242Y
F023344Metagenome / Metatranscriptome210Y
F030758Metagenome / Metatranscriptome184Y
F037095Metagenome / Metatranscriptome168Y
F038246Metagenome166Y
F043932Metagenome / Metatranscriptome155Y
F047059Metagenome / Metatranscriptome150Y
F050377Metagenome / Metatranscriptome145Y
F051126Metagenome / Metatranscriptome144Y
F053291Metagenome / Metatranscriptome141N
F060917Metagenome / Metatranscriptome132Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_10000029101F030758GGAMATENKNFKVKNGLNVAGTATFGSNVILGETPLRFDTVTNKLQLQINGTWVPIALNSEIPDIASQVSFMDIGLAIDYNGQPIYTVQANGVNPAGTSKFVDGGSPSSTDADVSMVFDSGVI
Ga0209088_10000029104F043932AGGAMAKKFKSLLNLLTLAEDPLVGSSGDVYFNVTSKNIKIYNGAIWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQQTIDFSDINNNAGVVETSPAIIGIDGGTPTSSYVNASYTQLTLLDGGQIGD
Ga0209088_10000029108F037095AGGAGGMAKAKEDLNGDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLLMGGFAATAPVILKALNPNEASFGFTKK
Ga0209088_10000029122F087194AGGMTLDEYKQMVEAQRLASLSVALEALTKSDAIAKEMNK
Ga0209088_10000029127F017133N/AMSIFTKFATVSDYPKGLMNLCPCGQVVLAPALYHAGQPHWDNPNKCKELWAISQKEITNTPSK
Ga0209088_1000002913F000671AGGLSEKILCYSCNKTKNKLNLKKSSLLPINLFLCQTCIDDKLEPRWVVLIAGRQFGHELVKDFIQKRKYIGAEITASELLI
Ga0209088_10000029130F001562GGAGMGKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFSIGLIEHEDYLAEMENE
Ga0209088_10000029133F051126AGGMSAKPYTIVSLLEGKYYRSHSRHDEGVIQYATPRPEIWYGSGFEAYAIEVRSTRGIKNFWATVAVKVGD
Ga0209088_10000029134F007263AGGMIKEYLDENEFYFIKDQIKIHCDEQQFVHVCKAHGEQMGCYFCEFDYDKKCECEG
Ga0209088_10000029138F011299GGAMMTRKDYVAVAEILKFASDKAHPALFSKIVNDFAVMFAKDNERFDVNRFHEASGYHVTKLTSR
Ga0209088_1000002914F000473AGGMVSNVYDNKHFKYGMNQWTGEPNKPVFYTEEMKKRVWELKKPMFLLMDIVKYPDFLALRLYEDNFIQFDGVEKEKVIDYVTKVKKLLESYGVRVELEGKPTN
Ga0209088_10000029147F003422GGAMSVGSCIILFMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATITSLNQTKEGNTMDGMTVENLPLSDSEKYNPDLLVTYKVIRGFSDETYETDKVRNIEWELHNARTNSKAVSSLQNKISVVKDIISEAYADSEDQETLQAIAEALEIELVKEIEWSASIEVSGIITVNLLEDTHFDLDSEIEDALYADSHNGNIEVVDQEICNVRENC
Ga0209088_10000029151F001125GGCGGMGDRANFGFRDSKENVLFLYGHWAGYNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTEKTGWGIYINQLGDNEHKVPVIDWANQTFTLYEEDLSTVVFTSSLAAFVDKYSRLVM
Ga0209088_10000029153F023344AGGCGGMEPFTDTVGEHILGAIQVDIEQHLFEQWNDKNLDEGSDYAEYMFMQFAPDNLKQSYNEYYGYIEGDDFCL
Ga0209088_10000029154F053291AGGAGMITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0209088_10000029156F047059N/AMKIHLISLNQDLEDARNNEPLDEDEYWESDSFYMGAIDATEHLLSVATDIMINNERVY
Ga0209088_10000029157F000263AGGMNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESGEAMDSMVRTECEGALDTLVLLYQLTYDLSFAIGARDEA
Ga0209088_10000029159F000441AGGAGGMSDKYLNDQLSKAQKLLWGGSETENIEAHNIIAKLIKEKIEQVEL
Ga0209088_10000029161F050377AGGAMTTSTTTREYLKTQGIAVGKRGRFSAAALGVISKAVQDGVVFSDKKNAK
Ga0209088_10000029167F038246AGGAMGILDNFEAALEAEEPQKCHYCTKAAKYNDLAEVDTCRYDVVGVCECHSFKGLNS
Ga0209088_10000029173F060917AGGAMIEWLARRIFSWTSLREYIFDEVHLYDHLDTIVNDPEGMKIASCSWMEGDMWYGWNYDSNAKRYYFDDIGNKSLIGLWEDQWLKEADINE
Ga0209088_100000297F008814GAGMDKKLTVLEEIIKEIGEELYQKWYNALAVEDRTEEASRAMSVNAGETAIWVIQKFMDKFNKAADELKGE
Ga0209088_1000002978F000258GAGGMANYKLDAMFEIRKFLWNRLTWLGIFNEEEYYSDNLNETLVPIVPVQQQPEMNQFLSGKKHIVYDKIGMSYENNWMICCEQILLTLYSPELIDIVEIRNFLTDEFRRMDESARDVNKWAGLSDKFKFHSIHIADISSTAPSEEIQGFYAADVILEVKYSRITNGQGRFA
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