Scaffold Ga0209088_10000013

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000013
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 171916
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (37.17%)
• Novel Protein Genes: 36
• Novel Protein Genes with Ribosome Binding Sites (RBS): 15 (41.67%)
• Associated Families: 36

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007359	Metagenome / Metatranscriptome	352	Y
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F014229	Metagenome / Metatranscriptome	264	Y
F016115	Metagenome / Metatranscriptome	249	Y
F016774	Metagenome / Metatranscriptome	244	Y
F020649	Metagenome / Metatranscriptome	222	Y
F024058	Metagenome / Metatranscriptome	207	N
F024954	Metagenome / Metatranscriptome	203	N
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F032536	Metagenome / Metatranscriptome	179	Y
F032548	Metagenome / Metatranscriptome	179	Y
F032572	Metagenome / Metatranscriptome	179	N
F034466	Metagenome / Metatranscriptome	174	Y
F035215	Metagenome / Metatranscriptome	172	N
F036564	Metagenome / Metatranscriptome	169	N
F039478	Metagenome / Metatranscriptome	163	Y
F043788	Metagenome / Metatranscriptome	155	Y
F047507	Metagenome / Metatranscriptome	149	N
F048101	Metagenome / Metatranscriptome	148	N
F048121	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F050171	Metagenome / Metatranscriptome	145	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y
F078229	Metagenome / Metatranscriptome	116	Y
F082109	Metagenome / Metatranscriptome	113	Y
F096610	Metagenome / Metatranscriptome	104	N
F104482	Metagenome / Metatranscriptome	100	N
F104483	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_10000013106	F104483	GGAG	MNKKIIDKIDLVIEDIFNLQELIDFDTSDSSEYDLDSVVTLLAKIRGRVANQEDEVEKIDLKQL
Ga0209088_10000013110	F032536	GGA	MSQKQTFEELMRSFRFHKNPILNWFLGELSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0209088_10000013112	F104482	N/A	MTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFKFKLFPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0209088_10000013113	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAGVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLAKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0209088_10000013115	F078229	N/A	MSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKLKTFKKLKDADTFLDKYESN
Ga0209088_10000013119	F027756	N/A	MNLEDLIDRKILYLNYPINKYLIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLTKNEKQAK
Ga0209088_10000013120	F032548	N/A	MKNKQNKDMEKAIKLLEELVNQADEDCPQDCRTMHFTNALEEASEFIMEYKNTK
Ga0209088_10000013121	F036564	GGAG	MKMGRVCLDLNYIVDMDNQEMVERAIECLYEDLMQGVKYGNITNWIDVIEDKNAKKNMIPEFLLEKEND
Ga0209088_10000013122	F064403	GGAG	MTNPRSKILSDLKRAYLKEHSITLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF
Ga0209088_10000013129	F096610	N/A	MANRPKTYFVKMTDNINGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRVADILTK
Ga0209088_10000013132	F016774	N/A	MKQKVYYQNGEKESKKRVIHNMPSKEKKMTLLTDHLESLNYWRDQLLGLEKSYYSKDPEKERTCRNMINKYLDDVLDHNKKIKEKSKNKV
Ga0209088_10000013135	F048121	N/A	MNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSVK
Ga0209088_10000013136	F082109	N/A	MWTPVEIFLLTLLLNHSPTKSERLSVKEVIQNREAQLVIESVSLRNDFQY
Ga0209088_10000013137	F062446	N/A	MTFSIKRIIGFVLYCLFWILLAYLFIGCVNTSYKTIPSAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY
Ga0209088_10000013141	F048101	AGGAG	MTKKMKMKKFKNIKEFLETCSEGEKEYVYDLYNNASVADLIDLLFEHLPADETIKEIEEYREELEWDDNEAKKSNKLNRKCDCDFVGCQGC
Ga0209088_10000013143	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMRDFFLGLGRRVITEDEFINIGFNYALIKGLGEAKKTNKKSKKGRN
Ga0209088_10000013147	F026210	GGAG	MTQFINANPLDYDAKYPQSVDTSVNEDAKMFLMERNEGKEVAFQIEDGTQYYGKISYVPNSEHYCVVVDKNGTPWEWYVREEAVRFVENTIKESLWQNPLV
Ga0209088_10000013148	F071966	GAGG	MSLLGIYFDIEGYVFKPFYLLLGVLYFIVLITLLGTLYVVLYLRNTLENVLNNIENNRKKYNKLK
Ga0209088_10000013150	F011914	N/A	MISNNQIRALSEDELTYLFYCCKTEWDSLNMGYDFDWYVLKAFRNNMIHNLLNKHSANLTDENKGIILQILNKLEANI
Ga0209088_10000013159	F032572	N/A	MTTYKYIADYINKPTIFCYIVDCVINNNPYLFGGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDTLNRWGAKWERV
Ga0209088_10000013161	F025679	N/A	MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDVIDSNFGTGQLVNQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0209088_10000013163	F035215	AGGAGG	MKSSEQITKEISDRIVEYKALMIEHDNNQSAVDELESAIHELDHLLRWINE
Ga0209088_10000013166	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYIRPYNTGGRRGYLSVETYSWEEGLIELIAHELRHIYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNFKLNLV
Ga0209088_10000013170	F016115	AGGAG	LKTLEETFTSRGFKFTMVGRDGDVAIYKKRLDEPDSEAFNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAYTCIDREDADKRFVQLKEKLSAYVATSTLANGEKRGRGRPRKIDLTKTELVVS
Ga0209088_10000013176	F007359	N/A	MKLIKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKGVVSNRVKNTIDNIPNETFVRTAQVEDIYSLGTISAEKLDTDS
Ga0209088_10000013187	F024954	AGG	VIDYKYMKNIIENLVVGKYYQIENHIAICEMLNSTSNKKCLSRISGVGSVLAFYDEVTEVEMTPELLKQCEERKNGTMNFIGSFNESSKYKGD
Ga0209088_10000013191	F024058	N/A	MTHRMINWNFQRKQMRENMRKNMDSNESIITNSNNTPTYFGEIYLYEGTLVKVSYKTSANTAVVTFLEGKDKDKVGTINLNNASLVQKESK
Ga0209088_10000013199	F039478	N/A	MNWIKILNFIDGVFEEEEEQPVLGTLYKIKGEDLAFRYIRYSQEPFSTKPIYHFKHHQLKEHKFNNLSKIERKANSEEIRIYNLIKSHVNNIC
Ga0209088_10000013222	F009669	N/A	MLSHIFGPNWRSSISGILTVVAVSTAMSIHMDPSLVSFLPNHIENYIVAISRIVAVVSGIIFSLTVKDAKVTGGTVASTTEAEERIHPHGDNI
Ga0209088_10000013223	F014229	GGAG	MNKLQLAAVALLSVFLGACATTQTGQVDPATSVSNALPYVKPAVILACTVVLDQAVSGNDRIEKAKMINHVAVIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSIIKDIYAQQFARLDGNTTLAIKVLNAIASGCKDATASYVE
Ga0209088_10000013225	F010817	N/A	LKKFASVLVLNFFLIGCATVTPNKIEDDKSSYDATTPKQYDKDNGGLISFTSDGALITSQAHDRYNNLISMYKIKFKKEKAIELKIDSGIKPYKDTFNNDLYLIDSEHLVYFGVLNSWLKEKVPQDNIIDKVIDKVN
Ga0209088_1000001327	F043788	GGAGG	MGSLDDIYDMTQKLEDGNIEYLLITIQKGKKQGKADVFYYLKDRGSMRILAKGLDSFNKEIDNIERDEPGTNE
Ga0209088_1000001351	F020649	N/A	MVIKIKNWWTNLKTYDKFFFISFVPAMLFTFWGLSDLYINYFDLLSREDHLQFFLRFAFPISIATLITVLERNKRQKLIEDIKDYLDE
Ga0209088_1000001354	F034466	GGA	MRNLLLSNYEKSLPSKRDTEDFISNFHQYRTKKKAQEKTYYGLAFACILILTMIGSIVAKQNKNNLDIQTAAGVEKCNTQVMGK
Ga0209088_1000001357	F047507	N/A	VKKILNKLWNWKSKTVLVGLAIVISWIFWLKIGFELKKHYSITNLPNSCFVDSMIYASRCNLLLETSGEVWNSVYGFTFYYKDDVQNMLGHAICIFEYNNNLWMYDPNWGTSPICKIGKKKEYREKIRLYINQYYPIIVVEDFMLNDWTYVQKTKKNKMNKIYKEVSIHLDENKKE
Ga0209088_1000001395	F050171	AGG	MGLFNYIKVEQDLPLNEELKALNIDFKKEEFQTKELEESLMSTYIIRDYRLFELKINSHWEDNPDYAKDGSRFGEFFNKNKLVEDSREEVFRDDYTGTFTFGAYISGKTKESYDYFPDWKCVVVQGLLTEISLIKPIEKNSSRQRIESLEAFKKELDDHERKMRCPVYSFYFKYYVKAMNVIEWKLDAGINTIIRFFNWLRWKGIRKIIRILTPR