Scaffold Ga0209598_10010936

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10010936
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5876
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F014714	Metagenome / Metatranscriptome	260	N
F017469	Metagenome / Metatranscriptome	240	Y
F058947	Metagenome	134	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1001093611	F011756	GGAG	VSEPRYLSGDEYAHTGGYEELVNCKECAVEFDRTEYQSDTCSECEDKRVAREKESK
Ga0209598_1001093617	F014714	N/A	MIELKEPELLDYLKEFYYPDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLTEIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGIMF
Ga0209598_100109363	F058947	AGGAG	MSIACELQDLEVLMNKAGVQLTGNAYDTAQDYLQDNCACATYQYLLGYKAAI
Ga0209598_100109365	F072283	GGAG	MNTMQDLIDLIKPILPNALIIDTDSGILIETGLELGLGGLLQTLEREEA
Ga0209598_100109367	F006842	GAGG	MAYTPVICGDHLVPISECDCLSYMREITSSAERLIQLAKEREAMK
Ga0209598_100109369	F017469	GGAGG	MKSICQFCGWEIKKVEWYNNYDKSYACDDCLMNKDIEHYKEREEASR