Scaffold Ga0209598_10003317

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10003317
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12215
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013741	Metagenome / Metatranscriptome	268	Y
F019966	Metagenome	226	Y
F035668	Metagenome / Metatranscriptome	171	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000331711	F102815	AGGA	MRLPEELFLDAVNAYKAWVACGKDFLNHAQLFDVWDDAVTAYGQAVFLERNRAVHQVLQGLDLVQ
Ga0209598_1000331725	F019966	AGGAG	MSDFEVSNEYKLQTLNSRLEQLNVEGWHNEEAKTVNIALGNDEEVARLTANIQVIKDAIVAVKKQIADLA
Ga0209598_1000331728	F013741	AGGAG	LTEPTKPTNQTLLLQIVRDIEILKANSIQILDASRDHENRIRELEKQINRSAWIPALITAVLTSVSVYLISKGLK
Ga0209598_100033176	F035668	AGG	MTCNNCQDNCQCSRVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAILDLVLEKLTDAMDIP
Ga0209598_100033179	F077016	AGGA	VPTNSAENVREFYRKQGEERERVRLIELLKEQNVIRNCAATGKLVFVNCNTLEVLYLKEISDE