Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10000145 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10000145 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54526
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (86.21%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

54526

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

75 (86.21%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002099	Metagenome / Metatranscriptome	593	Y
F002933	Metagenome / Metatranscriptome	519	Y
F041756	Metagenome	159	N
F051078	Metagenome / Metatranscriptome	144	N
F061793	Metagenome	131	N
F088784	Metagenome / Metatranscriptome	109	Y
F101020	Metagenome	102	N
F105044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1000014528	F105044	AGGA	MVLTTPEQINAYRLRCLRQGLKLEMKGMRLTAKGQTCYAILKGMGYKGTKQQVFDAVTIDSENALAEAINS
Ga0209598_1000014536	F088784	GGAGG	MERIMKARYKGICCKTGAIINVGDIIVYNSVTRKAWLTVDEDRMVVHVCCR
Ga0209598_1000014539	F061793	AGGA	MARQCSTIVGGKHMRYKYIVNWPNSITPVASFRTMKAARAHSAKLLDDQAFDHQFFGTKVYLPLIKRQPILKGNTL
Ga0209598_1000014541	F101020	GAGG	MNQVIKTADGYMVLMANEDYACDEHGNNTWDSFNEARDVLFTLSVTKQEQTAHTFGMHYAYVHLNITKNYERKEIASTFYTPKSKVWYAFIRGMERNERFPVIAKGAKADIRGVLKRLTESADEYIEDGSWIEALSKDIADAKYILENNL
Ga0209598_1000014554	F041756	GGA	MKIHELENLIMAAWITKEDIDSILWVVMDREKNPTEDELANLLIGLHALHDARMAKLFNAYEQVLKTNKIVYKGYDIFKNSPTL
Ga0209598_1000014562	F051078	AGGA	MDSSTSLKPNDIALILRPTIVDGIYQNNFQVLVSGFGPITISEDDVNNLIGMATILASVIPHMEEDDKLANKLVEYCGKMFADVGDISYNSDHDSFDDGSFTINTKTIGGIQ
Ga0209598_1000014583	F002933	GGA	MIPPIHKWYPMVQPESYPNRTDALERRAERMTEEYKQALKMKKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKLDVYI
Ga0209598_1000014584	F002099	N/A	MKWVAAALLIVSLLVSAAEDKCSVQQFYGIAYTIHNPSERHQQMSAWLTNHESFCSSKDMVVIWNNLPEWAGTADSAEIRSKVVRAYNMAIEREKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10000145

Overview

Ecosystem & Geography

Associated Families

Sequences