Scaffold Ga0209296_1137404

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1137404
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F031031	Metagenome	183	Y
F037113	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_11374041	F031031	GGAGG	MESKEVSGKQAIHYRNYRRARDRALVRLSHLYPNVYRDLLAEEKENDSTEGKSWVAGNTR
Ga0209296_11374042	F001477	GGAGG	MSNVYTLHPPKSDLILFYEVVEGGGENTWGGANAEQAIQWLAYAPVGSRLLVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209296_11374043	F000821	AGGAGG	MNREYLEAKVDLCLNQAEIDLKQQEIARAIKNLQRANSALSRIFNLEEDESE
Ga0209296_11374044	F037113	GGAG	MSNWTVWVGGSEVNWQHYAYKIDADRIAEFWREVKGYDDVIVEEVA