Scaffold Ga0209296_1080560

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1080560
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F032957	Metagenome	178	Y
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10805601	F032957	AGGAG	MDDFSPTTRMFSRSLREAYPKDYVNENIIEGPFYGAPNIHDVPVLFGLIAVISMIAYAL
Ga0209296_10805602	F079808	GGAGG	MKDLLEDIYKDEANVFYCCYCLQPQEEKIGCCHENHFVEFKYLDNDCKQEIAQEILNG
Ga0209296_10805603	F024504	AGGAG	VNRKPIGVDAPYRKSDYTYQNMLLDRIKDLEALVAKLEQRIKVLEENK
Ga0209296_10805604	F015570	GAGG	MNDKLDEAFDLLEFDVTDQIRNIAYLAEQKKISTGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASFAAFVRAMKS
Ga0209296_10805607	F004231	AGGAG	MSVKPSDFKHEICVYLEGVGECLVCFDILTPGDELDADHSDDYEIDFSVFDEDDKHITYDISKKQYNHCENKASDEMLEITTQWRKEWESV